Methanobaculum cuticulare^Ts

Citation

Formal styling

Methanobaculum cuticulare^Ts corrig. Protasov et al., 2023 (valid 2024)

Effective publication

Protasov et al., 2023

Corrigendum

In SeqCode Registry from “Methanobaculum cuticularis” (sic)

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:hfttq0ec (validated)

Canonical URL

https://seqco.de/i:32446

Nomenclature

Rank

Species

Syllabication

cu.ti.cu.la're

Etymology

N.L. neut. adj. cuticulare, referring to the cuticular surface of the termite hindgut epithelium, which is colonized by this organism

Nomenclatural type

NCBI Assembly: GCA_001639285.1

Reference strain

DSM 11139

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species description remains the same as in Miller (2015). The G+C content of the type genome is 26.7 mol%, and the genome size is 2.60 Mbp. 

Classification

Archaea » Methanobacteriota » Methanobacteria » Methanobacteriales » Methanobacteriaceae » Methanobaculum » Methanobaculum cuticulare^Ts

Parent

Methanobaculum

Alternative placements

• Methanobrevibacter assigned in Leadbetter, Breznak, 1996

Pseudonyms

• Methanobaculum cuticularis (Original, corrected name)

Genomics

Accession

NCBI Assembly:GCA_001639285.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 97.6%
• Contamination: 0.8%
• Quality: 93.6

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

234.0 ×

Source

• BioSample: SAMN04867344

Other features

• G+C Content: 26.79%
• Coding Density: 72.1%
• Codon Table: 11
• N50: 45,183 bp
• Contigs: 169
• Largest Contig: 102,431 bp
• Assembly Length: 2,608,702 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Methanobrevibacter cuticularis 

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_001639285.1
• Wikispecies: Methanobaculum cuticulare (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 6 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Protasov, Evgenii over 1 year ago

Submitted by

Protasov, Evgenii 8 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 7 months ago

Date of priority

2024-04-16 06:48 PM (UTC)