Methanacia filiformis^Ts

Citation

Formal styling

Methanacia filiformis^Ts Protasov et al., 2023 (priority 2024)

Effective publication

Protasov et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:hfttq0ec (validated)

Canonical URL

https://seqco.de/i:32451

Nomenclature

Rank

Species

Syllabication

fi.li.for'mis.

Etymology

L. neut. n. filum, a thread; L. fem. adj. suff. -formis, like, in the shape of; N.L. fem. adj. filiformis, thread-shaped

Nomenclatural type

NCBI Assembly: GCF_001639265.1

Reference strain

Strain sc|0040503: RFM-3 = DSM 11501 = JCM 39454 Lookup StrainInfo

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Filament-forming rods with slightly tapered ends, 0.23–0.28 μm in width by up to several hundred μmin length. Rarely occurs as single 4-μm-long cells. Nonmotile. trict anaerobe. Catalase positive. Metabolizes H2 and CO2 to CH4. Optimum temperature is 30 °C (range 10–33.5 °C). Optimum pH is 7.0–7.2 (range 6.0–7.5). Yeast extract (>0.01%) is required for growth (as in Miller, 2015). The G+C content of the type genome is 26.9 mol%, and the genome size is 2.60 Mbp.

Classification

Archaea » Methanobacteriota » Methanobacteria » Methanobacteriales » Methanobacteriaceae » Methanacia » Methanacia filiformis^Ts

Parent

Methanacia gtdb

Alternative placements

• Methanobrevibacter assigned in Leadbetter et al., 1998

Genomics

Accession

NCBI Assembly:GCF_001639265.1

Cultures

Strain sc|0040503

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 96.0%
• Contamination: 0.0%
• Quality: 96.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

125.0 ×

Source

• BioSample: SAMN04867340

Other features

• G+C Content: 26.5%
• Coding Density: 76.55%
• Codon Table: 11
• N50: 17,303 bp
• Contigs: 295
• Largest Contig: 68,572 bp
• Assembly Length: 2,606,143 bp
• Ambiguous Assembly Fraction: 3.8e-05%

Submitter comments

Methanobrevibacter filiformis 

Automated checks

Complete

See additional details

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Last modified 18 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCF_001639265.1
• GTDB Tree: s__Methanacia filiformis
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Methanacia filiformis
• Wikidata: Q130531921

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 18 days ago
• Submission process status
• Quality checks before valid publication

Registered

Over 2 years ago by Protasov, Evgenii

Submitted

Over 1 year ago by Protasov, Evgenii

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated

Over 1 year ago by Rodriguez-R, Luis M

Date of priority

2024-04-16 06:48 PM (UTC)