Methanomicula labiotermitis^Ts

Citation

Formal styling

Methanomicula labiotermitis^Ts Protasov et al., 2023 (valid 2024)

Effective publication

Protasov et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:hfttq0ec (validated)

Canonical URL

https://seqco.de/i:32530

Nomenclature

Rank

Species

Syllabication

la.bi.o.ter'mi.tis

Etymology

N.L. gen. n. labiotermitis, of or pertaining to Labiotermes, the genus name of the host

Nomenclatural type

NCBI Assembly: GCA_009780575.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species identified by metagenomic analyses. The G+C content of the type genome is 49.7%, and the estimated genome size is 1.44 Mbp.

Classification

Archaea » Methanobacteriota » Thermoplasmata » Methanomassiliicoccales » Methanomethylophilaceae » Methanomicula » Methanomicula labiotermitis^Ts

Parent

Methanomicula

Genomics

Accession

NCBI Assembly:GCA_009780575.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.76%
• Contamination: 0.81%
• Quality: 90.71

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 48.0%)
• 0 23S rRNAs
• tRNAs for 19 amino acids

Sequencing depth

14.0 ×

Source

• BioSample: SAMN12581835
• BioSample: SAMN13139696

Other features

• G+C Content: 49.65%
• Coding Density: 90.0%
• Codon Table: 11
• N50: 34,376 bp
• Contigs: 64
• Largest Contig: 80,954 bp
• Assembly Length: 1,370,212 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_009780575.1
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Methanomicula labiotermitis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 6 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Protasov, Evgenii over 1 year ago

Submitted by

Protasov, Evgenii 8 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria about 1 year ago

Validated by

Rodriguez-R, Luis M 7 months ago

Date of priority

2024-04-16 06:48 PM (UTC)