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Methanoplasma cognatum

Citation

Formal styling
Methanoplasma cognatum Protasov et al., 2023 (valid 2024)
Effective publication
Protasov et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:hfttq0ec (validated)
Canonical URL
https://seqco.de/i:32526

Nomenclature

Rank
Species
Syllabication
cog.na'tum
Etymology
L. neut. adj. cognatum, related by blood, sibling, referring to the Methanoplasma termitum as relative
Nomenclatural type
NCBI Assembly: GCA_009777615.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species identified by metagenomic analyses. The G+C content of the type genome is 52.2%, and the estimated genome size is 1.61 Mbp.
Classification
Archaea » Methanobacteriota » Thermoplasmata » Methanomassiliicoccales » Methanomethylophilaceae » Methanoplasma » Methanoplasma cognatum
Parent
Methanoplasma

Genomics

Accession
NCBI Assembly:GCA_009777615.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.98%
  • Contamination: 2.42%
  • Quality: 85.88
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
38.0 ×
Source
Other features
  • G+C Content: 52.26%
  • Coding Density: 90.19%
  • Codon Table: 11
  • N50: 267,672 bp
  • Contigs: 7
  • Largest Contig: 648,276 bp
  • Assembly Length: 1,619,733 bp
  • Ambiguous Assembly Fraction: 0.0062%
Submitter comments
CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Protasov, Evgenii over 1 year ago
Submitted by
Protasov, Evgenii 8 months ago
Curators
Validated by
Rodriguez-R, Luis M 7 months ago
Date of priority
2024-04-16 06:48 PM (UTC)

Publications
1

Citation Title
Protasov et al., 2023, Frontiers in Microbiology Diversity and taxonomic revision of methanogens and other archaea in the intestinal tract of terrestrial arthropods
Effective publication


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