Spongiicolonus versatilis^Ts

Citation

Formal styling

Spongiicolonus versatilis^Ts Nguyen et al., 2023 (valid 2024)

Effective publication

Nguyen et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:44vcemye (validated)

Canonical URL

https://seqco.de/i:32578

Nomenclature

Rank

Species

Syllabication

ver.sa.ti'lis

Etymology

L. masc. adj. versatilis, versatile

Nomenclatural type

NCBI Assembly: GCA_028286165.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A sponge symbiont with a versatile metabolism

Notes

The calculated completeness of the type genome has been deemed an underestimation on the basis of its biology.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Arenicellales » Spongiicolonaceae » Spongiicolonus » Spongiicolonus versatilis^Ts

Parent

Spongiicolonus gtdb

Genomics

Accession

NCBI Assembly:GCA_028286165.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 81.15%
• Contamination: 1.22%
• Quality: 75.05

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 26.0%)
• 0 23S rRNAs
• tRNAs for 15 amino acids

Sequencing depth

10.0 ×

Source

• BioSample: SAMN30287262
• And 3 more…

Other features

• G+C Content: 64.61%
• Coding Density: 93.95%
• Codon Table: 11
• N50: 10,525 bp
• Contigs: 218
• Largest Contig: 35,943 bp
• Assembly Length: 1,830,795 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness was estimates with CheckM, which might underestimate completeness for divergent symbiont clades

Automated checks

Complete

See additional details

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Last modified 8 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_028286165.1
• GTDB Tree: s__Spongiicolonus versatilis
• Wikispecies: Spongiicolonus versatilis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 10 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Thomas, Torsten about 1 year ago

Submitted by

Thomas, Torsten 10 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed by

Palmer, Marike 10 months ago

Validated by

Palmer, Marike 10 months ago

Date of priority

2024-02-01 10:13 PM (UTC)