Spongiicolonus versatilis^Ts

Citation

Formal styling

Spongiicolonus versatilis^Ts Nguyen et al., 2023 (priority 2024)

Effective publication

Nguyen et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:44vcemye (validated)

Canonical URL

https://seqco.de/i:32578

Nomenclature

Rank

Species

Syllabication

ver.sa.ti'lis

Etymology

L. masc. adj. versatilis, versatile

Notes

The calculated completeness of the type genome has been deemed an underestimation on the basis of its biology.

Nomenclatural type

NCBI Assembly: GCA_028286165.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A sponge symbiont with a versatile metabolism

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Arenicellales » Spongiicolonaceae » Spongiicolonus » Spongiicolonus versatilis^Ts

Parent

Spongiicolonus

Genomics

Accession

NCBI Assembly:GCA_028286165.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 81.15%
• Contamination: 1.22%
• Quality: 75.05

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 26.0%)
• 0 23S rRNAs
• tRNAs for 15 amino acids

Sequencing depth

10.0 ×

Source

• BioSample: SAMN30287262
• And 3 more…

Other features

• G+C Content: 64.61%
• Coding Density: 93.95%
• Codon Table: 11
• N50: 10,525 bp
• Contigs: 218
• Largest Contig: 35,943 bp
• Assembly Length: 1,830,795 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness was estimates with CheckM, which might underestimate completeness for divergent symbiont clades

Automated checks

Complete

See additional details

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Last modified about 1 year ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_028286165.1
• GTDB Tree: s__Spongiicolonus versatilis
• Wikispecies: Spongiicolonus versatilis
• Wikidata: Q128598614

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified almost 2 years ago
• Submission process status
• Quality checks before valid publication

Registered

Over 2 years ago by Thomas, Torsten

Submitted

Almost 2 years ago by Thomas, Torsten

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Endorsed

Almost 2 years ago by Palmer, Marike

Validated

Almost 2 years ago by Palmer, Marike

Date of priority

2024-02-01 10:13 PM (UTC)