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Methanolapillus africanus

This name contravenes at least one rule from the SeqCode, and it's at risk of being rejected:
  • Missing source data: The raw sequencing data should be available in INSDC databases (e.g., Sequence Read Archive)

Citation

Formal styling
Methanolapillus africanus Protasov et al., 2023 (priority 2024)
Effective publication
Protasov et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:hfttq0ec (validated)
Canonical URL
https://seqco.de/i:32602

Nomenclature

Rank
Species
Syllabication
a.fri.ca'nus
Etymology
L. masc. adj. africanus, pertaining to Africa
Nomenclatural type
NCBI Assembly: GCA_032714475.1
Reference strain
Strain sc|0041793: DSM 115569 = JCM 39381 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Irregular cocci cells, 1–2 µm in diameter, non-motile. Use methanol and methylamines as methanogenesis substrates together with hydrogen. Requires acetate, yeast extract, Casamino acids, and coenzyme M. The optimum temperature is 37 °C. The G+C content of the type genome is 44.4%, and the estimated genome size is 2.10 Mbp. 
Classification
Archaea » Halobacteriota » Methanosarcinia » Methanosarcinales » Methanosarcinaceae » Methanolapillus » Methanolapillus africanus
Parent
Methanolapillus ncbigtdb

Genomics

Accession
NCBI Assembly:GCA_032714475.1
Cultures
Strain sc|0041793
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 94.1%
  • Contamination: 0.7%
  • Quality: 90.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 75.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
115.0 ×
Source
Other features
  • G+C Content: 44.4%
  • Coding Density: 78.74%
  • Codon Table: 11
  • N50: 124,322 bp
  • Contigs: 34
  • Largest Contig: 367,644 bp
  • Assembly Length: 2,103,793 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 8 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 3 years ago by Protasov, Evgenii
Submitted
Over 2 years ago by Protasov, Evgenii
Curators
Validated
About 2 years ago by Rodriguez-R, Luis M
Date of priority
2024-04-16 06:48 PM (UTC)

Publications
1

Citation Title
Protasov et al., 2023, Frontiers in Microbiology Diversity and taxonomic revision of methanogens and other archaea in the intestinal tract of terrestrial arthropods
Effective publication


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seqco.de/r:hfttq0ec