Mesorhizobium montanum


Citation

Formal styling
Mesorhizobium montanum van Lill et al., 2024
Effective publication
van Lill et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:3oauw4q0 (validated)
Cannonical URL
https://seqco.de/i:32826

Nomenclature

Rank
Species
Syllabication
mon.ta'num
Etymology
L. neut. adj. montanum, pertaining to mountains, in particular the Kamiesburg mountains, surrounding Kamieskroon, the region where soil was sampled from.
Nomenclatural type
NCBI Assembly: GCA_033977145.1
Reference strain
MSK 1335
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are Gram-negative, motile rods. On YM agar, following 5 days of incubation at 28 °C, the colonies are circular, cream in colour, translucent with entire margins and convex elevations with mucoid consistency due to the excessive production of exopolysaccharides. The strain was not able to tolerate a pH of 4, but could grow at a pH of 10 and a NaCl concentration of 0.5 % to 1 %. The strain was able to grow at 15 °C to 37 °C.The strain tested positive for the activity of nitrate reduction to nitrite, arginine dehydrogenase, urease, β-galactosidase, β-glucosidase, oxidase and catalase but not tryptophan deaminase. The strain could utilize potassium gluconate, trisodium citrate, dextrin, D-maltose, D-trehalose, D-cellubiose, D-gentiobiose, sucrose, D-turanose, stachyose, D-raffinose, α-D-lactose, D-melibiose, β -methyl-D glucoside, D-salicin, N-acetyl-D glucosamine, N-acetyl- β -D mannosamine, N-acetyl-D galactosamine, N-acetyl neuraminic acid, α-D-glucose, D-mannose, D-fructose, D-galactose, 3-methyl glucose, D-fucose, L- fucose, L-rhamnose, Inosine, D-sorbitol, D-mannitol, D-arabitol, inositol, glycerol, D- glucose6-PO4, D-fructose6-PO4, D-aspartic acid, gelatin, Glycyl-L-proline, L-alanine, L-arginine, L-aspartic acid, L-glutamic acid, L-histidine, L-pyroglutamic acid, pectin, D-galacturonic acid, L-galactonic acid lactone, D-gluconic acid, D-glucuronic acid, glucuronamide, mucic acid, quinic acid, D-saccharic acid, P-hydroxyphenyl acetic acid, methyl pyruvate, D-lactic acid methyl ester, L-lactic acid, citric acid, α-keto-glutaric acid, D-malic acid, L-malic acid, bromo-succinic acid, tween 40, γ -Amino-butyric acid, α-hydroxy- butyric acid, β-Hydroxy-D-L-Butyric acid, acetoacetic acid, propionic acid, acetic acid, formic acid as sole source of carbon. The strain was able to form effective symbiosis with V. karroo.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Phyllobacteriaceae » Mesorhizobium » Mesorhizobium montanum
Parent
Mesorhizobium

Genomics

Accession
NCBI Assembly:GCA_033977145.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
127.2 ×
Source
Other features
  • G+C Content: 62.94%
  • Coding Density: 86.05%
  • Codon Table: 11
  • N50: 220,403 bp
  • Contigs: 76
  • Largest Contig: 501,236 bp
  • Assembly Length: 6,869,492 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Van Lill, Melandre 8 months ago
Submitted by
Van Lill, Melandre 6 months ago
Curators
Endorsed by
Rodriguez-R, Luis M 3 months ago
Validated by
Rodriguez-R, Luis M about 2 months ago
Date of priority
2024-04-27 05:48 AM (UTC)

Publications
1

Citation Title
van Lill et al., 2024, Systematic and Applied Microbiology SeqCode facilitates naming of South African rhizobia left in limbo
Effective publication



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