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Benthobacter isfjordensisTs

Citation

Formal styling
Benthobacter isfjordensisTs Silva-Solar et al., 2024 (priority 2025)
Effective publication
Silva-Solar et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:af2x99s7 (validated)
Canonical URL
https://seqco.de/i:33357

Nomenclature

Rank
Species
Syllabication
is.fjor.den'sis
Etymology
N.L. masc. adj. isfjordensis, from or belonging to Isfjorden, Svalbard
Nomenclatural type
NCBI Assembly: GCA_964014115.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Based on KEGG metabolic annotation, Benthobacter isfjordensis shows basic carbon metabolism almost complete, no carbon fixation pathways, no flagella or pili, denitrification is incomplete (only import of extracellular nitrate, reduction of nitrate to nitrite, and reduction of nitrite to nitric oxide), and nitrilase present. The pathway for F420 biosynthesis is almost complete. Regarding functional annotation based on CAZy and DBCAN, the glycoside hydrolases present in this MAG are: GH3, GH1, GH13 (sub-families 9, 11, 16, 23, and 20), GH77, GH57, GH149, GH32, and GH133. 
Classification
Bacteria » Actinomycetota » Acidimicrobiia » Benthobacterales » Benthobacteraceae » Benthobacter » Benthobacter isfjordensisTs
Parent
Benthobacter

Genomics

Accession
NCBI Assembly:GCA_964014115.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.0%
  • Contamination: 3.8%
  • Quality: 75.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
19.8 ×
Source
Other features
  • G+C Content: 62.0%
  • Coding Density: 89.25%
  • Codon Table: 11
  • N50: 226,422 bp
  • Contigs: 31
  • Largest Contig: 425,214 bp
  • Assembly Length: 2,893,760 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
The tools and softwares used to get and assess the quality of the genome are listed below: 
  • The assembler was Flye-meta v2.9.1
  • The binner was MaxBin2 v2.2.7
  • Completenes, contamination, and GC content were determined using CheckM v1.2.2
  • 16S and 23S rRNA gene were recovered using barnap v0.9
  • Number of unique tRNA was determined using DRAM v1.2.2
Automated checks
Complete
See additional details
Last modified 4 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago by Silva, Sebastian
Submitted
Over 1 year ago by Silva, Sebastian
Curators
Endorsed
Over 1 year ago by Rodriguez-R, Luis M
Validated
4 months ago by Palmer, Marike
Date of priority
2025-08-04 09:00 AM (UTC)

Publications
1

Citation Title
Silva-Solar et al., 2024, Systematic and Applied Microbiology Acidimicrobiia, the actinomycetota of coastal marine sediments: Abundance, taxonomy and genomic potential
Effective publication


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