Agrobacterium albertimagni


Citation

Formal styling
Agrobacterium albertimagni Salmassi et al., 2002 (priority 2025)
Effective publication
Salmassi et al., 2002
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:wffua1y1 (validated)
Canonical URL
https://seqco.de/i:35090

Nomenclature

Rank
Species
Syllabication
al.ber.ti.mag'ni
Etymology
N.L. gen. masc. n. albertimagni, an arbitrarily formed genitive noun referring to the Dominican scholar Albertus Magnus, who was the first person to describe arsenic
Nomenclatural type
NCBI Assembly: GCA_000300855.1
Reference strain
Strain sc|0039551: AOL15 = ATCC BAA-24 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Gram-negative rod, 1.5 μm long by 0.5 μm wide. When the microorganism is grown in mannitol medium, one polar flagellum is observed by transmission electron microscopy and the species is motile although it is immotile in citrate medium. Strict aerobe; positive for esculin hydrolysis, β-galactosidase activity, and oxidase activity but negative for indole formation, glucose fermentation, arginine dihydrolase activity, and gelatinase activity. From the assimilation tests, able to utilize D-glucose, L-arabinose, D-mannose, D-mannitol, N-acetyl-D-glucosamine, maltose, L-malic acid, dextrin, D-arabitol, D-fructose, L-fucose, D-galactose, gentiobiose, α-D-glucose, m-inositol, α-D-lactose, lactulose, D-melibiose, β-methyl-D-glucoside, D-psiscose, D-raffinose, L-rhamnose, D-sorbitol, sucrose, trehalose, turanose, methyl pyruvate, mono-methyl succinate, D,L-lactic acid, L-aspartic acid, L-glutamic acid, L-ornithine, L-proline, L-pyroglutamic acid, urocanic acid, inosine, uridine, glycerol, glucose-1-phosphate, and glucose-6-phosphate. Optimal growth occurs at 30°C on mannitol, at neutral pH (7 or 8) and at low % NaCl. The strain can oxidize arsenite but does not appear to grow chemolithoautotrophically. Phylogenetically the species is 97.0% identical to Blastobacter aggregatus and 97.7% identical to Agrobacterium tumefaciens. Based on DNA-DNA hybridizations, AOL15 is 30 to 31% identical to Blastobacter aggregatus and 10 to 15% identical to Agrobacterium tumefaciens, which confirms that it is a new species. Bacterium isolated from the surface of the aquatic macrophyte Potamogeton pectinatus in Hot Creek, California. The strain type is AOL15—deposited in the American Type Culture Collection (ATCC BAA-24).
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Agrobacterium » Agrobacterium albertimagni
Parent
Agrobacterium ncbi
Alternative placements

Genomics

Accession
NCBI Assembly:GCA_000300855.1
Cultures
Strain sc|0039551
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
120.0 ×
Source
Other features
  • G+C Content: 61.2%
  • Coding Density: 89.09%
  • Codon Table: 11
  • N50: 324,785 bp
  • Contigs: 55
  • Largest Contig: 567,938 bp
  • Assembly Length: 5,085,061 bp
  • Ambiguous Assembly Fraction: 0.00014%
Automated checks
Complete

Last modified 6 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago and claimed 9 months ago by Van Lill, Melandre
Submitted
9 months ago by Van Lill, Melandre
Curators
Validated
6 months ago by St. John, Emily
Date of priority
2025-03-20 06:41 PM (UTC)

Publications
2

Citation Title
Ma et al., 2023, Frontiers in Microbiology Phylogenomic reappraisal of the family Rhizobiaceae at the genus and species levels, including the description of Ectorhizobium quercum gen. nov., sp. nov
Salmassi et al., 2002, Geomicrobiology Journal Oxidation of Arsenite by Agrobacterium albertimagni , AOL15, sp. nov., Isolated from Hot Creek, California
Effective publication



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