Peteryoungia desertarenae


Citation

Formal styling
Peteryoungia desertarenae Rahi et al., 2021 (priority 2025)
Effective publication
Rahi et al., 2021
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:nk8mq3y4 (validated)
Canonical URL
https://seqco.de/i:37912

Nomenclature

Rank
Species
Syllabication
de.ser.ta.re'nae
Etymology
L. neut. n. desertum, desert; L. fem. n. arena, sand; N.L. gen. fem. n. desertarenae, of desert sand
Nomenclatural type
NCBI Assembly: GCF_005860795.2
Reference strain
Strain sc|0040548: ADMK78 = MCC 3400 = KACC 21383 = JCM 33657 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are Gram-negative, straight rods with round ends (0.3–0.5 × 1.5–2 µm), and non-motile. Colonies grown on Zobell Marine Agar are 1–3 mm in diameter, circular, raised with an entire margin, and translucent opacity. The optimal temperature for growth is 28 °C and the optimal pH is 7.0. Growth occurs in the absence of NaCl with up to 2% tolerance in Zobell Marine broth. It is oxidase and catalase positive. The strain showed positive results in Biolog GN III analyses for utilization of d-maltose, d-trehalose, d-cellobiose, d-gentiobiose, sucrose, d-turanose, α- d-lactose, d-melibiose, β-methyl-d-glucoside, d-salicin, N-acetyl-d-glucosamine, N-acetyl-β-d-mannosamine, N-acetyl-d-galactosamine, α-d-glucose, d-mannose, d-fructose, d-galactose, d-fucose, l-fucose, l-rhamnose, inosine, d-sorbitol, d-mannitol, d-arabitol, myo-inositol, glycerol, d-glucose-6-phosphate, d-fructose-6-phosphate, d-aspartic acid, Glycyl-l-proline, glycyl-l-proline, l-alanine, l-arginine, l-aspartic acid, l-glutamic acid, l-histidine, l-pyroglutamic acid, l-serine, pectin, d-galacturonic acid, d-gluconic acid, d-glucuronic acid, glucuronamide, mucic acid, d-saccharic acid, p-hydroxy-phenylacetic acid, d-lactic acid methyl easter, l-lactic acid, citric acid, α-keto-glutaric acid, d,l-malic acid, bromo-succinic acid, Tween 40, γ-amino-butyric acid, α-hydroxy-butyric acid, α-hydroxy-d,l butyric acid, α-keto-butyric acid, acetoacetic acid, propionic acid, acetic acid, formic acid, sodium lactate, tetrazolium violet and blue, nalidixic acid, lithium chloride (Table S3). Positive results in API ZYM strips for leucine arylamidase, trypsin, naphthol-AS-BI-phosphohydrolase, α-glucosidase, N-acetyl-β-glucosaminidase activities (Table S4). C18:0 and C18:1 ω7c are the predominant cellular fatty acids. The DNA G + C content of the type strain is 58.6 mol%.

The type strain ADMK78T (= MCC 3400T; KACC 21383T; JCM 33657T) was isolated from saline desert sand collected from the Kutch District of Gujarat, India. The GenBank sequence accession number of the genome sequence is CP058350-CP058352, and the 16S rRNA gene sequence of strain ADMK78T is MK942856.

Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Peteryoungia » Peteryoungia desertarenae
Parent
Peteryoungia ncbi

Genomics

Accession
NCBI Assembly:GCF_005860795.2
Cultures
Strain sc|0040548
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 100.0%)
  • 3 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
82.0 ×
Source
Other features
  • G+C Content: 58.6%
  • Coding Density: 88.76%
  • Codon Table: 11
  • N50: 3,590,542 bp
  • Contigs: 3
  • Largest Contig: 3,590,542 bp
  • Assembly Length: 4,342,374 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 6 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago and claimed 9 months ago by Van Lill, Melandre
Submitted
9 months ago by Van Lill, Melandre
Curators
Validated
6 months ago by Rodriguez-R, Luis M
Date of priority
2025-03-20 06:52 PM (UTC)

Publications
1

Citation Title
Rahi et al., 2021, Archives of Microbiology Peteryoungia gen. nov. with four new species combinations and description of Peteryoungia desertarenae sp. nov., and taxonomic revision of the genus Ciceribacter based on phylogenomics of Rhizobiaceae
Effective publication



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