Actinotalea subterranea


Citation

Formal styling
Actinotalea subterranea Semenova et al., 2022 (priority 2025)
Effective publication
Semenova et al., 2022
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:bk0hdqw0 (validated)
Canonical URL
https://seqco.de/i:39440

Nomenclature

Rank
Species
Syllabication
sub.ter.ra.ne'a
Etymology
L. fem. adj. subterranea, subterranean, referring to the site of isolation
Nomenclatural type
NCBI Assembly: GCA_008364845.1
Reference strain
Strain sc|0040321: HO-Ch2 = VKM Ac-2850 = KCTC 49656 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Description is based on two strains. Cells are Gram-stain-positive rods, motile at the early stage of incubation. Colonies formed after 5 days incubation on R2A medium at 28 °C are yellow, smooth, circular, convex, and non-transparent, with entire edges. Grows on PCA, nutrient agar, R2A, and LB media. Growth of the type strain occurs in the presence of 0–4% (w/v) NaCl (optimum, 1–2% NaCl), at pH 6.0–8.8 (optimum, pH 8.0–8.3) and at 10–40 °C (optimum, 28 °C). Growth of the reference strain occurs at 15–40 °C, 0–6% (w/v) NaCl and pH 6.2–8.5 with optimal conditions at 22–28 °C, 2–4% (w/v) NaCl and pH 6.6–7.5. Catalase-positive and oxidase-negative. Cells are positive for the following enzyme activities: esterase (C4), N-acetyl-β-glucosaminidase, α-galactosidase, β-galactosidase, α-glucosidase, β-glucosidase, β-glucuronidase, naphthol-AS-BI-phosphohydrolase, leucine arylamidase, esterase lipase (C8), lipase (C14), valine arylamidase, acid phosphatase, and cystine arylamidase, but negative for trypsin, α-chymotrypsin, alkaline phosphatase, α-mannosidase, urease, and α-fucosidase. Does not produce indole or H2S, but NH3 is produced from peptone. Negative for the methyl red test and Voges–Proskauer reaction. Reduces nitrate to nitrite in a medium with acetate, but does not reduce nitrate to N2. Chemoorganoheterotrophic, facultatively anaerobic. In aerobic conditions utilizes peptone, yeast extract, acetate, and pyruvate; acid is produced from aesculin (Fe citrate), L-arabinose, arbutin, D-cellobiose, D-fructose, D-galactose, D-glucose, glycogen, D-mannose, salicin, D-sucrose, D-xylose, D-maltose, D-mannitol, starch, D-trehalose, D-turanose, and N-acetylglucosamine, but not from D-adonitol, amygdalin, D-arabinose, D-arabite, L-arabite, dulcitol, erythritol, D-fucose, L-fucose, inositol, inulin, D-lactose, D-lyxose, methyl-βD-xylopyranoside, methyl-αD-mannopyranoside, methyl-αD-glucopyranoside, D-melibiose, D-melicitose, gluconate K, 2-ketogluconate K, 5-ketogluconate K, D-ribose, L-rhamnose, D-sorbitol, L-sorbose, D-tagatose, xylitol, and L-xylose. In API 20E tests, positive for fermentation/oxidation of glucose, sucrose, and arabinose; and negative for arginine dihydrolase, lysine decarboxylase, ornithine decarboxylase, L-tryptophan deaminase, gelatinase, citrate utilization, indole production, and fermentation/oxidation of inositol, sorbitol, and rhamnose. Acetic, propionic, iso-butyric, and iso-valeric acids and CO2 are the major products of anaerobic glucose fermentation. Hydrogen is not produced. Sensitive to ampicillin (10 µg), chloramphenicol (30 µg), penicillin (10 µg), ciprofloxacin (5 µg), and erythromycin (15 µg), but resistant to gentamicin (10 µg) and kanamycin (30 µg). The peptidoglycan type is A4β, containing L-Orn (Lys)-D-Ser-D-Glu. The major cell-wall sugar is rhamnose; galactose, mannose, and glucose are also present. Major fatty acids (>5%) are anteiso-C15:0, C14:0, C16:0, and C15:0. The major menaquinone is MK-9(H4). The major polar lipids are diphosphatidylglycerol, unidentified glycolipids, and phosphoglycolipids.
The type strain is HO-Ch2T, isolated from the methanogenic enrichment obtained from a petroleum reservoir (Nurlat, Russia). The DNA G + C content of the genome of the type strain HO-Ch2T is 73.4% and the genome size is 4.0 Mb. The EMBL/GenBank accession numbers for the 16S rRNA gene sequence and genome sequence of strain HO-Ch2T are MT225794 and GCA_008364845.1, respectively.
Classification
Bacteria » Actinomycetota » Actinomycetes » Micrococcales » Cellulomonadaceae » Actinotalea » Actinotalea subterranea
Parent
Actinotalea ncbigtdb

Genomics

Accession
NCBI Assembly:GCA_008364845.1
Cultures
Strain sc|0040321
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
197.0 ×
Source
Other features
  • G+C Content: 73.45%
  • Coding Density: 90.7%
  • Codon Table: 11
  • N50: 335,339 bp
  • Contigs: 28
  • Largest Contig: 684,601 bp
  • Assembly Length: 4,027,363 bp
  • Ambiguous Assembly Fraction: 0.0048%
Automated checks
Complete

Last modified 3 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago and claimed 6 months ago by Grouzdev, Denis
Submitted
6 months ago by Grouzdev, Denis
Curators
Validated
4 months ago by Rodriguez-R, Luis M
Date of priority
2025-06-15 12:11 PM (UTC)

Publications
2

Citation Title
Semenova et al., 2022, Microorganisms Correction: Semenova et al. Physiological and Genomic Characterization of Actinotalea subterranea sp. nov. from Oil-Degrading Methanogenic Enrichment and Reclassification of the Family Actinotaleaceae. Microorganisms 2022, 10, 378
Semenova et al., 2022, Microorganisms Physiological and Genomic Characterization of Actinotalea subterranea sp. nov. from Oil-Degrading Methanogenic Enrichment and Reclassification of the Family Actinotaleaceae
Effective publication



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