Cybelea palsarum

Citation

Formal styling

Cybelea palsarum Ji et al., 2021 (valid 2024)

Effective publication

Ji et al., 2021

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tgimo_87 (validated)

Canonical URL

https://seqco.de/i:43705

Nomenclature

Rank

Species

Syllabication

pal.sa'rum

Etymology

N.L. fem. n. palsa, peat mound (from Finnish palsa); N.L. gen. pl. n. palsarum, from palsa wetlands

Nomenclatural type

NCBI Assembly: GCA_003166915.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Obligate heterotroph. Organic substrates include peptides, amino acids, carboxylates, taurine, urea, sarcosine, PVA, arylsulfates, poly- and oligosaccharides, sugars, fluoroacetate. Degradation of β-glucan (GH1, GH16), cellulose/β-glucan (GH5_40), chitin (GH18), β-D-galactoside (GH35), and xyloglucan (GH74). PHA storage. Polyphosphate storage. Also defined based on ANI, and phylogenies of 16S rRNA gene, 15 ribosomal proteins, and the GTDB.

Classification

Bacteria » Eremiobacterota » Eremiobacteria » “Baltobacterales” » “Baltobacteraceae” » Cybelea » Cybelea palsarum

Parent

Cybelea gtdb

Genomics

Accession

NCBI Assembly:GCA_003166915.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.82%
• Contamination: 1.43%
• Quality: 87.67

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

12.1 ×

Source

• BioSample: SAMN08178942
• BioSample: SAMN07124917

Other features

• G+C Content: 61.0%
• Coding Density: 89.96%
• Codon Table: 11
• N50: 21,774 bp
• Contigs: 249
• Largest Contig: 90,318 bp
• Assembly Length: 3,357,118 bp
• Ambiguous Assembly Fraction: 0.026%

Automated checks

Complete

See additional details

---

Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_003166915.1
• GTDB Tree: s__Cybelea palsarum
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Cybelea palsarum (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 8 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Ferrari, Belinda 3 months ago

Submitted by

Ferrari, Belinda 2 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Palmer, Marike 8 days ago

Date of priority

2024-10-17 12:47 AM (UTC)