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Tumulicola scandinaviensisTs

This name contravenes at least one rule from the SeqCode, and it's at risk of being rejected:
  • Name missing in effective publication: The reported effective publication does not mention this name

Citation

Formal styling
Tumulicola scandinaviensisTs Ji et al., 2021 (priority 2024)
Effective publication
Ji et al., 2021
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:tgimo_87 (validated)
Canonical URL
https://seqco.de/i:43733

Nomenclature

Rank
Species
Syllabication
scan.di.na.vi.en'sis
Etymology
L. fem. n. Scandinavia, region in northern Europe; -ensis, of or from (a place); N.L. fem. adj. scandinaviensis, from Scandinavia (Sweden)
Nomenclatural type
NCBI Assembly: GCA_003140835.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Obligate heterotroph. CO oxidation. Organic substrates include peptides, amino acids, carboxylates, taurine, acetate, sarcosine, arylsulfates, poly- and oligosaccharides, sugars. PHA storage. Also defined based on ANI, and phylogenies of 16S rRNA gene, 15 ribosomal proteins, and the GTDB.
Classification
Bacteria » Eremiobacterota » Eremiobacteria » “Baltobacterales” » “Baltobacteraceae” » Tumulicola » Tumulicola scandinaviensisTs
Parent
Tumulicola gtdb

Genomics

Accession
NCBI Assembly:GCA_003140835.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.27%
  • Contamination: 0.25%
  • Quality: 95.02
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 31.0%)
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
14.1 ×
Source
Other features
  • G+C Content: 61.5%
  • Coding Density: 88.28%
  • Codon Table: 11
  • N50: 63,880 bp
  • Contigs: 130
  • Largest Contig: 273,020 bp
  • Assembly Length: 4,001,325 bp
  • Ambiguous Assembly Fraction: 0.017%
Submitter comments
Completeness estimated with CheckM
Automated checks
Complete
See additional details
Last modified over 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago by Ferrari, Belinda
Submitted
Almost 2 years ago by Ferrari, Belinda
Curators
Validated
Over 1 year ago by Palmer, Marike
Date of priority
2024-10-17 12:47 AM (UTC)

Publications
1

Citation Title
Ji et al., 2021, The ISME Journal Candidatus Eremiobacterota, a metabolically and phylogenetically diverse terrestrial phylum with acid-tolerant adaptations
Effective publication


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seqco.de/r:tgimo_87