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Pampinifervens yunnanense

Citation

Formal styling
Pampinifervens yunnanense Palmer et al., 2025
Effective publication
Palmer et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:54y7mje2 (validated)
Canonical URL
https://seqco.de/i:43945

Nomenclature

Rank
Species
Syllabication
yun.na.nen'se
Etymology
N.L. neut. adj. yunnanense, referring to Yunnan, the southern Province of China
Nomenclatural type
NCBI Assembly: GCA_037926845.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
In addition, and in contrast, to the characteristics described for the genus, no hydrogenases are annotated in the genomes of this species. This would suggest that the oxidation of sulfide and thiosulfate may serve as electron donors in this species. The genomes of this species range in G+C content between 45.99% and 46.82%. Genealogical concordance and ANI support the novelty of this species, and phylogenomics and AAI places this species in the genus Pampinifervens gen. nov. The nomenclatural type for the species is the genome DRTY-6_201601_bin_61Ts, recovered from the hot spring Diretiyanqu-6, in Tengchong, China. The genome is available under the GenBank assembly accession GCA_037926845.1. (BioProject: PRJNA1041563, BioSample: SAMN38287353). 
Classification
Bacteria » Aquificota » Aquificia » Aquificales » Aquificaceae » Pampinifervens » Pampinifervens yunnanense
Parent
Pampinifervens

Genomics

Accession
NCBI Assembly:GCA_037926845.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.82%
  • Contamination: 0.61%
  • Quality: 91.77
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
40.0 ×
Source
Other features
  • G+C Content: 45.99%
  • Coding Density: 96.37%
  • Codon Table: 11
  • N50: 28,621 bp
  • Contigs: 100
  • Largest Contig: 61,067 bp
  • Assembly Length: 1,761,808 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimates were done with CheckM v 1. The number and completeness of rRNA genes were determined with barrnap v. 0.9, and the number of tRNAs were determined with tRNAscan-SE v. 2.0
Automated checks
Complete
See additional details
Last modified 9 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago by Palmer, Marike
Submitted
Over 1 year ago by Palmer, Marike
Curators
Endorsed
Over 1 year ago by Rodriguez-R, Luis M
Validated
3 months ago by St. John, Emily
Date of priority
2025-08-26 03:49 PM (UTC)

Publications
1

Citation Title
Palmer et al., 2025, Systematic and Applied Microbiology Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs
Effective publication


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