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Pampinifervens tengchongense

Citation

Formal styling
Pampinifervens tengchongense Palmer et al., 2025
Effective publication
Palmer et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:54y7mje2 (validated)
Canonical URL
https://seqco.de/i:43944

Nomenclature

Rank
Species
Syllabication
ten.gchon.gen'se
Etymology
N.L. neut. adj. tengchongense, referring to Tengchong
Nomenclatural type
INSDC Nucleotide: JBBKAY000000000
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
In addition to traits reported for the genus, genomes of this species encode most genes for a denitrification pathway and can likely convert nitrate to dinitrogen. Genomes of this species also encode an arsenite transporter, arsenite oxidase, and arsenate reductase. The G+C content of the genomes range between 43.26% and 45.56%. Genealogical concordance and ANI support the novelty of this species, and phylogenomics and AAI places this species in the genus Pampinifervens gen. nov. The type for this species is the genome GXS_2011_Aq_binTs, recovered from Gongxiaoshe hot spring in Tengchong, China, and is available under the GenBank assembly accession number GCA_037722225.1. (BioProject: PRJNA1048437, BioSample: SAMN38639757). 
Classification
Bacteria » Aquificota » Aquificia » Aquificales » Aquificaceae » Pampinifervens » Pampinifervens tengchongense
Parent
Pampinifervens

Genomics

Accession
INSDC Nucleotide:JBBKAY000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.12%
  • Contamination: 0.54%
  • Quality: 90.42
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
12.05 ×
Source
Other features
  • G+C Content: 44.33%
  • Coding Density: 96.54%
  • Codon Table: 11
  • N50: 15,255 bp
  • Contigs: 128
  • Largest Contig: 70,772 bp
  • Assembly Length: 1,457,668 bp
  • Ambiguous Assembly Fraction: 0.37%
Submitter comments
Completeness and contamination estimates were done with CheckM v 1. The number and completeness of rRNA genes were determined with barrnap v. 0.9, and the number of tRNAs were determined with tRNAscan-SE v. 2.0
Automated checks
Complete
See additional details
Last modified 9 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago by Palmer, Marike
Submitted
Over 1 year ago by Palmer, Marike
Curators
Endorsed
Over 1 year ago by Rodriguez-R, Luis M
Validated
3 months ago by St. John, Emily
Date of priority
2025-08-26 03:49 PM (UTC)

Publications
1

Citation Title
Palmer et al., 2025, Systematic and Applied Microbiology Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs
Effective publication


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seqco.de/r:54y7mje2