Promineifilum glycogenicum

Citation

Formal styling

Promineifilum glycogenicum corrig. Petriglieri et al., 2023 (valid 2024)

Effective publication

Petriglieri et al., 2023

Corrigendum

In SeqCode Registry from “Promineofilum glycogenicum” (sic)

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:82uy5hy3 (validated)

Cannonical URL

https://seqco.de/i:43987

Nomenclature

Rank

Species

Syllabication

gly.co.ge.ni'cum

Etymology

N.L. neut. adj. glycogenicum, indicating the presence of intracellular glycogen

Nomenclatural type

NCBI Assembly: GCA_016707605.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species is established on the same basis as the genus and the type material is the genome Ega_BAT3C.159. Fluorescence in situ hybridization with genus-specific FISH probes shows filamentous morphology (20-140 × 0.8 µm).

Classification

Bacteria » Chloroflexota » Anaerolineae » Promineifilales » Promineifilaceae » Promineifilum » Promineifilum glycogenicum

Parent

Promineifilum gtdb

Pseudonyms

• Promineofilum glycogenicum (Original, corrected name)

Genomics

Accession

NCBI Assembly:GCA_016707605.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.0%
• Contamination: 4.55%
• Quality: 67.25

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

16.0 ×

Source

• BioSample: SAMN16425746
• BioSample: SAMN14825681

Other features

• G+C Content: 66.77%
• Coding Density: 87.71%
• Codon Table: 11
• N50: 316,583 bp
• Contigs: 26
• Largest Contig: 1,110,292 bp
• Assembly Length: 5,044,159 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Although this MAG has a borderline completeness as assessed by checkM (v1.2.2, =90.00%, instead of >90.00%) and a contamination of 4.55%, the automatic assessment with MiGA estimates a slightly higher completeness and this MAG is the only one present under this GTDB R214 species (d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Promineofilales; f__Promineofilaceae; g__Promineofilum; s__Promineofilum sp016707605). When compared to all the 9 species representatives under this entire genus (g__Promineofilum), this MAG has very good quality by having low fragmentation (the 2nd lowest number of contig counts of 26, 2nd largest longest contig of 1.11 Mbp, 2nd largest N50 of 0.317 Mbp), and being present with 16S, 23S, and 5S rRNA genes, as well as 19 tRNA genes (>=18 as required by MiMAG standard), while having no ambiguous bases and gaps. All these suggests the high assembly quality of this MAG.

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_016707605.1

Search sequences

• NCBI Nucleotide

Local history

• This name was last modified 13 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Petriglieri, Francesca 4 months ago

Submitted by

Petriglieri, Francesca 2 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 13 days ago

Date of priority

2024-04-26 11:27 AM (UTC)