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Promineifilum glycogenicum

Citation

Formal styling
Promineifilum glycogenicum corrig. Petriglieri et al., 2023 (valid 2024)
Effective publication
Petriglieri et al., 2023
Corrigendum
In SeqCode Registry from “Promineofilum glycogenicum” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:82uy5hy3 (validated)
Canonical URL
https://seqco.de/i:43987

Nomenclature

Rank
Species
Syllabication
gly.co.ge.ni'cum
Etymology
N.L. neut. adj. glycogenicum, indicating the presence of intracellular glycogen
Nomenclatural type
NCBI Assembly: GCA_016707605.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species is established on the same basis as the genus and the type material is the genome Ega_BAT3C.159. Fluorescence in situ hybridization with genus-specific FISH probes shows filamentous morphology (20-140 × 0.8 µm).
Classification
Bacteria » Chloroflexota » Anaerolineae » Promineifilales » Promineifilaceae » Promineifilum » Promineifilum glycogenicum
Parent
Promineifilum gtdb
Pseudonyms
  • Promineofilum glycogenicum (Original, corrected name)

Genomics

Accession
NCBI Assembly:GCA_016707605.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.0%
  • Contamination: 4.55%
  • Quality: 67.25
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
16.0 ×
Source
Other features
  • G+C Content: 66.77%
  • Coding Density: 87.71%
  • Codon Table: 11
  • N50: 316,583 bp
  • Contigs: 26
  • Largest Contig: 1,110,292 bp
  • Assembly Length: 5,044,159 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Although this MAG has a borderline completeness as assessed by checkM (v1.2.2, =90.00%, instead of >90.00%) and a contamination of 4.55%, the automatic assessment with MiGA estimates a slightly higher completeness and this MAG is the only one present under this GTDB R214 species (d__Bacteria; p__Chloroflexota; c__Anaerolineae; o__Promineofilales; f__Promineofilaceae; g__Promineofilum; s__Promineofilum sp016707605). When compared to all the 9 species representatives under this entire genus (g__Promineofilum), this MAG has very good quality by having low fragmentation (the 2nd lowest number of contig counts of 26, 2nd largest longest contig of 1.11 Mbp, 2nd largest N50 of 0.317 Mbp), and being present with 16S, 23S, and 5S rRNA genes, as well as 19 tRNA genes (>=18 as required by MiMAG standard), while having no ambiguous bases and gaps. All these suggests the high assembly quality of this MAG.
Automated checks
Complete
See additional details
Last modified 8 days ago

Metadata

Outside links and data sources
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Local history
Registered by
Petriglieri, Francesca 9 months ago
Submitted by
Petriglieri, Francesca 7 months ago
Curators
Validated by
Rodriguez-R, Luis M 5 months ago
Date of priority
2024-04-26 11:27 AM (UTC)

Publications
1

Citation Title
Petriglieri et al., 2023, mSystems A comprehensive overview of the Chloroflexota community in wastewater treatment plants worldwide
Effective publication


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