Caldilinea saccharophila

Citation

Formal styling

Caldilinea saccharophila Petriglieri et al., 2023 (valid 2024)

Effective publication

Petriglieri et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:82uy5hy3 (validated)

Canonical URL

https://seqco.de/i:44005

Nomenclature

Rank

Species

Syllabication

sac.cha.ro'phi.la

Etymology

Gr. neut. n. saccharon, sugar; Gr. masc. n. philos, lover; N.L. fem. adj. saccharophila, indicating a preference for sugars as carbon sources

Nomenclatural type

NCBI Assembly: GCA_016710365.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A species established on the basis of MiGA taxonomic novelty analyses, ANI, 16S rRNA gene phylogenetic reconstruction, FISH and phylogenomic analyses.

Classification

Bacteria » Chloroflexota » Caldilineae » Caldilineales » Caldilineaceae » Caldilinea » Caldilinea saccharophila

Parent

Caldilinea gtdb

Genomics

Accession

NCBI Assembly:GCA_016710365.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.73%
• Contamination: 1.82%
• Quality: 88.63

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 17 amino acids

Sequencing depth

8.4 ×

Source

• BioSample: SAMN16426149
• BioSample: SAMN14825702

Other features

• G+C Content: 60.66%
• Coding Density: 86.41%
• Codon Table: 11
• N50: 172,279 bp
• Contigs: 68
• Largest Contig: 510,391 bp
• Assembly Length: 6,608,906 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified 20 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_016710365.1
• GTDB Tree: s__Caldilinea saccharophila
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Caldilinea saccharophila (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 6 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Petriglieri, Francesca 9 months ago

Submitted by

Petriglieri, Francesca 7 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 6 months ago

Date of priority

2024-04-26 11:27 AM (UTC)