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Defluviibacillus avedoerensisTs

Citation

Formal styling
Defluviibacillus avedoerensisTs Petersen et al., 2025
Effective publication
Petersen et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ftcpaei9 (validated)
Canonical URL
https://seqco.de/i:44098

Nomenclature

Rank
Species
Syllabication
a.ve.doe.ren'sis
Etymology
N.L. masc. adj. avedoerensis, of the city Avedoere from which the MAG is retrieved from
Nomenclatural type
NCBI Assembly: GCA_016703665.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Rod shaped bacteria (2.1± 0.4 x 0.6±0.1 µm) abundant in activated sludge globally.
Based on genome-wide gene annotaion it has the potential for full glycolysis, pentose phosphate pathway, citric acid cycle and glyoxylate pathway. It furthermore showed potential for transportation of polar amino acids and branched amino acids.
Presence of narGHI genes showed potential to reduce nitrate along with potential for further conversion via norB . It also had the potential to reduce nitrite to nitric oxide via nitrite reductase, nirS. 
Defluviibacillus avedoerensis had predicted all genes of the three pathways (polyP, glycogen and PHA) associated with Pao metabolism.
Classification
Bacteria » Pseudomonadota » Betaproteobacteria » Burkholderiales » Burkholderiaceae » Defluviibacillus » Defluviibacillus avedoerensisTs
Parent
Defluviibacillus

Genomics

Accession
NCBI Assembly:GCA_016703665.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.87%
  • Contamination: 0.95%
  • Quality: 93.12
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
13.4 ×
Source
Other features
  • G+C Content: 57.45%
  • Coding Density: 90.88%
  • Codon Table: 11
  • N50: 457,693 bp
  • Contigs: 20
  • Largest Contig: 1,429,987 bp
  • Assembly Length: 4,788,042 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
The binning in this project followed the mmlong v0.1.2 hybrid-metaflowpipeline after the assembly step. Metagenome contigs were translated into proteins using FragGeneScan v1.31, annotated taxonomically using Kaiju v1.6.0 against the proGenomes database (2017-05-16). DASTool v1.1.1 --search_engine diamond was used to dereplicate and select for the best representative bin. The dereplicated bins in the analysis were checked for completeness and contamination using CheckM --lineage_wf v1.0.11.
Genome taxonomy was determined using GTDB-Tk v1.0.2 and the refseq release 89 (2019-06-19) database, and the dependencies pplacer v1.1, FastANI v1.2, Prodigal v2.6.2, FastTree 2 v1.2, and HMMER v3.1b2.
Automated checks
Complete
See additional details
Last modified 3 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 1 year ago by Fischer Petersen, Jette
Submitted
Over 1 year ago by Fischer Petersen, Jette
Curators
Endorsed
Over 1 year ago by Rodriguez-R, Luis M
Validated
3 months ago by Palmer, Marike
Date of priority
2025-08-28 09:33 AM (UTC)

Publications
1

Citation Title
Petersen et al., 2025, Systematic and Applied Microbiology Diversity and physiology of abundant Rhodoferax species in global wastewater treatment systems
Effective publication


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