JSONPDF

Symbiodolus clandestinusTs

Citation

Formal styling
Symbiodolus clandestinusTs Wierz et al., 2024
Effective publication
Wierz et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ysrrov43 (validated)
Canonical URL
https://seqco.de/i:44107

Nomenclature

Rank
Species
Syllabication
clan.de.sti'nus
Etymology
L. masc. adj. clandestinus, secret or hidden
Nomenclatural type
INSDC Nucleotide: CP152425.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Monophyletic clade of intracellular symbionts within the Gammaproteobacteria; Enterobacterales, defined by its 16S rRNA gene sequences as well as (draft) genomes of 16 symbiont strains associated with insects across six different orders. For this so far uncultured, rod-shaped bacterium with an average length of about 1 µm, we propose the name ‘Symbiodolus clandestinus' gen. nov. sp. nov.
Notes
This newfound bacterial symbiont forms a monophyletic clade formed by 22 (draft-) genomes and thus we believe represents its own genus.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Enterobacteriaceae » Symbiodolus » Symbiodolus clandestinusTs
Parent
Symbiodolus

Genomics

Accession
INSDC Nucleotide:CP152425.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 1.0%
  • Quality: 95.0
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
317.0 ×
Source
Other features
  • G+C Content: 45.0%
  • Coding Density: 84.94%
  • Codon Table: 11
  • N50: 1,499,781 bp
  • Contigs: 1
  • Largest Contig: 1,499,781 bp
  • Assembly Length: 1,499,781 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 10 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Wierz, Jürgen 8 months ago
Submitted by
Wierz, Jürgen 7 months ago
Curators
Endorsed by
Rodriguez-R, Luis M 6 months ago
Validated by
Rodriguez-R, Luis M 3 months ago
Date of priority
2024-08-18 01:10 PM (UTC)

Publications
1

Citation Title
Wierz et al., 2024, The ISME Journal Intracellular symbiont Symbiodolus is vertically transmitted and widespread across insect orders
Effective publication


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license