Salinivivens marinusTs


Citation

Formal styling
Salinivivens marinusTs Prabhu et al., 2024
Effective publication
Prabhu et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:sfdglxu8 (validated)
Canonical URL
https://seqco.de/i:46736

Nomenclature

Rank
Species
Syllabication
ma.ri'nus
Etymology
L. masc. adj. marinus, of the sea
Nomenclatural type
NCBI Assembly: GCA_038142605.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Inferred to break down a wide range of organic carbon substrates (Chitin, Pectin, Cellulose and Starch). Capable of performing aerobic anoxygenic photosynthesis (pufLM), and thiosulfate oxidation (soxABCDXYZ), likely performing osmoregulation using trk1 (K+ transporter) and proXV (Glycine betaine) and inferred to be motile (fliGMN, motAB gene). Also carries genes for phosphorus uptake and regulation(pho, pst). Based on the genome reporting standards for MAGs , the estimated completeness 94.41%, contamination 0.3%, and the presence of the 5S (108 bp), 16S (1,457 bp), and 23S (2, 718bp) rRNA gene and 32 tRNAs. Type genome is defined as “high-quality” draft MAG, with genome size of 2.6 Mbps
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Rhodobacterales » Paracoccaceae » Salinivivens » Salinivivens marinusTs
Parent
Salinivivens

Genomics

Accession
NCBI Assembly:GCA_038142605.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.41%
  • Contamination: 0.3%
  • Quality: 92.91
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 40.5%
  • Coding Density: 90.97%
  • Codon Table: 11
  • N50: 712,863 bp
  • Contigs: 25
  • Largest Contig: 738,016 bp
  • Assembly Length: 2,667,129 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were evaluated using CheckM v 1.1.3
Automated checks
Complete
See additional details

Last modified 10 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Chuvochina, Maria 6 months ago
Submitted by
Chuvochina, Maria 3 months ago
Curators
Validated by
Rodriguez-R, Luis M 3 months ago
Date of priority
2024-08-12 01:22 AM (UTC)

Publications
1

Citation Title
Prabhu et al., 2024, ISME Communications Machine learning and metagenomics identifies uncharacterized taxa inferred to drive biogeochemical cycles in a subtropical hypereutrophic estuary
Effective publication



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