Polynucleobacter hahnii


Citation

Formal styling
Polynucleobacter hahnii Salcher et al., 2025
Effective publication
Salcher et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:opjv7zsc (validated)
Canonical URL
https://seqco.de/i:48716

Nomenclature

Rank
Species
Syllabication
hah.ni'i
Etymology
L. masc. gen. n. hahnii, of Hahn, named after the scientist Martin W. Hahn, who isolated and described many species of the genus Polynucleobacter.
Nomenclatural type
NCBI Assembly: GCA_965234415.1
Reference strain
Strain sc|0038961: ZE-4 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Type strain is Polynucleobacter hahnii ZE-4 (GCA_965234415.1), isolated from 5 m depth from Lake Zurich, Switzerland (date: 2019-04-03), via high-throughput dilution to extinction cultivation. ZE-4 has a genome size of 2.3 Mbp with a genomic GC content of 43.7%, contains 3 rRNA genes and 38 tRNAs. The genome is complete, consisting of a circular chromosome. The genome contains genes encoding anoxygenic aerobic phototrophy (pufABLM). No genes for flagellar assembly and chemotaxis were annotated. Pathways for nitrate reduction, thiosulfate oxidation (Sox pathway), glycolate oxidation and the biosynthesis of all amino acids except for aspartate were predicted. Further, pathways for thiamine, riboflavin, NAD, pantothenate, coenzyme A, biotin, THF, ubiquinone, and heme biosynthesis were identified. The closest cultivated relative is Polynucleobacter sp. IMCC 30228 (GCF_021395205.1), with an average amino acid identity of 86.6% and average nucleotide identity of 82.8%. Current GTDB classification (R220): d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Polynucleobacter; s__Polynucleobacter sp903944725.
Classification
Bacteria » Pseudomonadota » Betaproteobacteria » Burkholderiales » Burkholderiaceae » Polynucleobacter » Polynucleobacter hahnii
Parent
Polynucleobacter

Genomics

Accession
NCBI Assembly:GCA_965234415.1
Cultures
Strain sc|0038961
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
150.5 ×
Source
Other features
  • G+C Content: 43.7%
  • Coding Density: 93.29%
  • Codon Table: 11
  • N50: 2,338,562 bp
  • Contigs: 1
  • Largest Contig: 2,338,562 bp
  • Assembly Length: 2,338,562 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome of a culture that was harvested by filtration on 0.22 µm filters; DNA was extracted with the Quiagen MagAttract HMW DNA kit. Sequencing was done with Illuminia Novaseq 6000, trimming of reads with BBMap v36.x, assembly with SPAdes v3.12.0. The genome was manually curated to a circular chromosome in Geneious 10 by repeated rounds of read mapping. Completeness and contamination were assessed with CheckM.
Automated checks
Complete

Last modified 6 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 1 year ago by Layoun, Paul
Submitted
7 months ago by Layoun, Paul
Curators
Endorsed
5 months ago by Rodriguez-R, Luis M
Validated
3 months ago by Valero Tebar, Juan
Date of priority
2025-08-28 03:27 PM (UTC)

Publications
1

Citation Title
Salcher et al., 2025, Nature Communications Bringing the uncultivated microbial majority of freshwater ecosystems into culture
Effective publication



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