Flavobacterium neuenschwanderi


Citation

Formal styling
Flavobacterium neuenschwanderi Salcher et al., 2025
Effective publication
Salcher et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:opjv7zsc (validated)
Canonical URL
https://seqco.de/i:48730

Nomenclature

Rank
Species
Syllabication
ne.u.en.schwan.der'i
Etymology
L. masc. gen. n. neuenschwanderi, of Neuenschwander, named after the Swiss scientist Stefan Neuenschwander, who studied freshwater Flavobacteria in Lake Zurich.
Nomenclatural type
NCBI Assembly: GCA_965234425.1
Reference strain
Strain sc|0038948: GE-10 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Type strain is Flavobacterium neuenschwanderi GE-10 (GCA_965234425.1), isolated from 5 m depth from Greifensee, Switzerland (date: 2019-04-03), via high-throughput dilution to extinction cultivation. GE-10 has a genome size of 3.56 Mbp with a genomic GC content of 33.1%, contains 4 rRNA genes and 38 tRNAs. The genome is a high-quality draft consisting of 44 contigs. The genome contains genes encoding rhodopsins. Genes for gliding motility (gldBDHJKLMN, sprA) were annotated in the genome. Pathways for assimilatory sulfate reduction and the biosynthesis of all amino acids were predicted. Further, pathways for riboflavin, NAD, coenzyme A, biotin, THF, menaquinone, and heme were identified. The closest cultivated relative is Flavobacterium psychrotolerans RB1R5 (GCF_003097635.1), with an average amino acid identity of 74.81% and average nucleotide identity of 74.37%. Current GTDB classification (R220): d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__.
Classification
Bacteria » Bacteroidota » Flavobacteriia » Flavobacteriales » Flavobacteriaceae » Flavobacterium » Flavobacterium neuenschwanderi
Parent
Flavobacterium

Genomics

Accession
NCBI Assembly:GCA_965234425.1
Cultures
Strain sc|0038948
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.16%
  • Contamination: 0.0%
  • Quality: 99.16
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
329.5 ×
Source
Other features
  • G+C Content: 33.1%
  • Coding Density: 88.52%
  • Codon Table: 11
  • N50: 140,847 bp
  • Contigs: 44
  • Largest Contig: 401,377 bp
  • Assembly Length: 3,556,313 bp
  • Ambiguous Assembly Fraction: 2.8e-05%
Submitter comments
Genome of a culture that was harvested by filtration on 0.22 µm filters; DNA was extracted with the Quiagen MagAttract HMW DNA kit. Sequencing was done with Illuminia Novaseq 6000, trimming of reads with BBMap v36.x, assembly with SPAdes v3.12.0. The genome was manually polished in Geneious 10 by repeated rounds of read mapping. Completeness and contamination were assessed with CheckM.
Automated checks
Complete

Last modified 6 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 1 year ago by Layoun, Paul
Submitted
7 months ago by Layoun, Paul
Curators
Endorsed
5 months ago by Rodriguez-R, Luis M
Validated
3 months ago by Valero Tebar, Juan
Date of priority
2025-08-28 03:27 PM (UTC)

Publications
1

Citation Title
Salcher et al., 2025, Nature Communications Bringing the uncultivated microbial majority of freshwater ecosystems into culture
Effective publication



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