Pernthalerella aquaticaTs


Citation

Formal styling
Pernthalerella aquaticaTs Salcher et al., 2025
Effective publication
Salcher et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:o5wsiwof (validated)
Canonical URL
https://seqco.de/i:49110

Nomenclature

Rank
Species
Syllabication
a.qua.ti'ca
Etymology
L. fem. adj. aquatica, living or found in the water.
Nomenclatural type
NCBI Assembly: GCA_965194445.1
Reference strain
Strain sc|0038788: GE-M3 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Type species is Pernthalerella aquatica GE-M3 (GCA_965194445.1), isolated from 5 m depth from Greifensee, Switzerland (date: 2019-04-03), via high-throughput dilution to extinction cultivation. GE-M3 has a genome size of 3.1 Mbp with a genomic GC content of 53.8%, contains 3 rRNA genes and 41 tRNAs. The genome is a high-quality draft consisting of 7 contigs. The genome contains genes encoding anoxygenic aerobic phototrophy (pufABLM) and the complete Calvin cycle for carbon fixation via RuBisCO. Genes for flagellar and pilus assembly were annotated. Pathways for urea degradation, glycolate oxidation and the biosynthesis of all amino acids were predicted. Further, pathways for thiamine, riboflavin, NAD, pantothenate, coenzyme A, biotin, THF, and heme biosynthesis were identified. The closest cultivated relative is Paucimonas lemoignei DSM 7445 (GCF_004342585.1) with an average amino acid identity of 64.5% and average nucleotide identity of 71.1% and two other newly proposed species, Pernthalerella lacuna MaE-M21 (GCA_965194545.1) and Pernthalerella communis MsE-6 (GCA_965194595.1), with AAI of 72.1-73.1% and ANI of 71.9-72.5%. Current GTDB classification (R220): d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__SYFN01; s__. 
Classification
Bacteria » Pseudomonadota » Betaproteobacteria » Burkholderiales » Burkholderiaceae » Pernthalerella » Pernthalerella aquaticaTs
Parent
Pernthalerella

Genomics

Accession
NCBI Assembly:GCA_965194445.1
Cultures
Strain sc|0038788
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
335.7 ×
Source
Other features
  • G+C Content: 53.8%
  • Coding Density: 89.79%
  • Codon Table: 11
  • N50: 698,248 bp
  • Contigs: 7
  • Largest Contig: 1,340,443 bp
  • Assembly Length: 3,146,478 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome of a culture that was harvested by filtration on 0.22 µm filters; DNA was extracted with the Quiagen MagAttract HMW DNA kit. Sequencing was done with Illuminia Novaseq 6000, trimming of reads with BBMap v36.x, assembly with SPAdes v3.12.0. The genome was manually polished in Geneious 10 by repeated rounds of read mapping. Completeness and contamination were assessed with CheckM.
Automated checks
Complete

Last modified 6 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Salcher, Michaela M
Submitted
8 months ago by Salcher, Michaela M
Curators
Endorsed
6 months ago by Rodriguez-R, Luis M
Validated
3 months ago by Rodriguez-R, Luis M
Date of priority
2025-08-28 03:23 PM (UTC)

Publications
1

Citation Title
Salcher et al., 2025, Nature Communications Bringing the uncultivated microbial majority of freshwater ecosystems into culture
Effective publication



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