Mesorhizobium zhangyense


Citation

Formal styling
Mesorhizobium zhangyense Xu et al., 2018 (priority 2025)
Effective publication
Xu et al., 2018
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:z6gfeom6 (validated)
Canonical URL
https://seqco.de/i:49624

Nomenclature

Rank
Species
Syllabication
zhang.yen'se
Etymology
N.L. neut. adj. zhangyense, referring to Zhangye, the site of isolation of the type strain
Nomenclatural type
NCBI Assembly: GCF_011045115.1
Reference strain
Strain sc|0039556: 23-3-2 = CGMCC 1.15528 = NBRC 112337 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Gram-negative, non-spore-forming rod, which is motile, aerobic and 0.3–0.5 µm wide and by 0.5–1.2 µm long. Colonies formed on YMA medium are circular, convex, white, semitranslucent and usually have a diameter of 1–2 mm after 3 days growth at 28 °C. The growth and pH optima are 28 °C and pH 7.0, respectively, while growth is inhibited at 10 and 40 °C and above pH of 9.0. The cells could utilize inositol, l-arabinose, d-mannitol, gentiobiose, glucose, sodium citrate, galactose, sodium malonate, pyruvic acid sodium, sucrose, d-xylose, d-ribose, d-fructose, d-mannose, d-maltose, sodium acetate, sodium propionate, esculine, salicine, amygdaline, d-saccharose, d-trehalose, d-tyranose and succinic acid as sole carbon sources, but not l-rhamnose, d-sorbitol, dulcitol, d-lactose, d-raffinose, d-melibiose, erythritol, d-arabinose, d-adonitol, l-xylose, l-sorbose, inuline, xylitol, l-fucose, d-fucose and d-arabitol as the sole source of carbon. The cells grew on YMA medium up to 3% (w/v) of NaCl but did not grow in YMA supplemented with 0.1% malachite green, 0.1% methylene blue or 0.1% neutral red. The cells were sensitive to 10 μg ml−l of tetracycline, gentamicin, trobicin, chloramphenicol, ampicillin, streptomycin, kanamycin, and neomycin. The cells were negative for potassium gluconate, potassium 2-ketogluconate, potassium 5-ketogluconate, litmus milk alkali production, indole production, and Voges–Proskauer test, but positive for oxidase, urease, reduction of nitrate and nitrite, double hydrolysis of arginine, casein hydrolysis and hydrolysis of gelatin. The cells could assimilate citric acid, phenylacetic acid and N-acetyl glucosamine. The predominant ubiquinone was Q-10 and the main cellular fatty acids are summed feature 8 (comprising of C18:1ω7c and/or C18:1ω6c; 24.56%).
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Phyllobacteriaceae » Mesorhizobium » Mesorhizobium zhangyense
Parent
Mesorhizobium ncbi

Genomics

Accession
NCBI Assembly:GCF_011045115.1
Cultures
Strain sc|0039556
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
200.0 ×
Source
Other features
  • G+C Content: 61.3%
  • Coding Density: 88.76%
  • Codon Table: 11
  • N50: 551,741 bp
  • Contigs: 64
  • Largest Contig: 727,010 bp
  • Assembly Length: 6,357,320 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 6 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
12 months ago and claimed 9 months ago by Van Lill, Melandre
Submitted
9 months ago by Van Lill, Melandre
Curators
Validated
6 months ago by St. John, Emily
Date of priority
2025-03-20 08:23 PM (UTC)

Publications
1

Citation Title
Xu et al., 2018, Archives of Microbiology Mesorhizobium zhangyense sp. nov., isolated from wild Thermopsis lanceolate in northwestern China
Effective publication



© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:z6gfeom6