Neorhizobium lilii


Citation

Formal styling
Neorhizobium lilii corrig. Liu et al., 2020 (priority 2025)
Effective publication
Liu et al., 2020
Corrigendum
In SeqCode Registry from “Neorhizobium lilium” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ttb3bgyb (validated)
Canonical URL
https://seqco.de/i:49629

Nomenclature

Rank
Species
Syllabication
li'li.i
Etymology
L. gen. n. lilii, of a lily, referring to the plant genus Lilium
Nomenclatural type
NCBI Assembly: GCF_004053875.1
Reference strain
Strain sc|0039537: 24NR = ACCC 61588 = JCM 33731 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are gram negative, aerobic, non-spore-forming, non-motile, rod-shaped, 0.3–0.5 µm in width, and 0.7–1.7 µm in length. Colonies grown on YMA for 3 days are circular with regular margins, convex, milky, and 2–3 mm in diameter after incubation for 48 h on YMA at 30 °C. Growth occurs in the presence of 0–2% (w/v) NaCl (optimum, 0% NaCl), pH 6.0–9.0 (optimum, 7.0–8.0), and 15–42 °C (optimum, 30 °C). Catalase and oxidase positive. Starch and casein are not hydrolyzed. Nitrate cannot be reduced. Urease and β-galactosidase are negative. Can assimilate glucose, mannose, arabinose, mannitol, and malic acid. Voges-Proskauer test is positive. Negative for fermentation of mannose, sorbitol, rhamnose, and melibiose. In the API ZYM system, positive for alkaline phosphatase, leucine arlyamidase, acid phosphatase, naphthol-AS-BI-phosphohydrolase, β-glucuronidase. The following carbon sources are utilized: d-cellobiose, gentiobiose, d-mannose, d-fructose, d-galactose, myo-inositol, glycyl-l-proline, l-alanine, l-aspartic acid, l-serine, d-galacturonic acid, d-glucuronic acid, l-malic acid, bromo-succinic acid, β-hydroxy- d, l-butyric acid, acetoacetic acid, acetic acid. l-arginine, 3-methyl glucose, and d-turanose are weakly utilized. The major cellular fatty acids in strain 24NRT are summed feature 8 and C19:0 cyclo ω8c. The genome size of strain 24NRT is 5.22 Mb. The DNA G+C content is 60.3 mol %. The type strain is 24NRT (= ACCC 61588T = JCM 33731T), isolated from the bulbs of Lilium pumilum in the Hebei Province, PR China.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Neorhizobium » Neorhizobium lilii
Parent
Neorhizobium ncbigtdb
Pseudonyms
  • Neorhizobium lilium (Original, corrected name)

Genomics

Accession
NCBI Assembly:GCF_004053875.1
Cultures
Strain sc|0039537
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.1%
  • Contamination: 0.9%
  • Quality: 93.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 60.3%
  • Coding Density: 89.02%
  • Codon Table: 11
  • N50: 1,301,730 bp
  • Contigs: 16
  • Largest Contig: 1,313,281 bp
  • Assembly Length: 5,222,315 bp
  • Ambiguous Assembly Fraction: 0.0038%
Automated checks
Complete

Last modified 6 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
12 months ago and claimed 9 months ago by Van Lill, Melandre
Submitted
9 months ago by Van Lill, Melandre
Curators
Endorsed
6 months ago by St. John, Emily
Validated
6 months ago by St. John, Emily
Date of priority
2025-03-20 05:55 PM (UTC)

Publications
1

Citation Title
Liu et al., 2020, Archives of Microbiology Neorhizobium lilium sp. nov., an endophytic bacterium isolated from Lilium pumilum bulbs in Hebei province
Effective publication



© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:ttb3bgyb