Neorhizobium lilii


Citation

Formal styling
Neorhizobium lilii corrig. Liu et al., 2020 (Pt. idem; priority 2025)
Effective publication
Liu et al., 2020
Corrigendum
In SeqCode Registry from “Neorhizobium lilium” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ttb3bgyb (validated)
Canonical URL
https://seqco.de/i:49629

Nomenclature

Rank
Species
Syllabication
li'li.i
Etymology
L. gen. n. lilii, of a lily, referring to the plant genus Lilium
Nomenclatural type
Genome sc|0003518 Ts
Paratypes
Reference strain
Strain sc|0039537 Pt: 24NR = ACCC 61588 = JCM 33731 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are gram negative, aerobic, non-spore-forming, non-motile, rod-shaped, 0.3–0.5 µm in width, and 0.7–1.7 µm in length. Colonies grown on YMA for 3 days are circular with regular margins, convex, milky, and 2–3 mm in diameter after incubation for 48 h on YMA at 30 °C. Growth occurs in the presence of 0–2% (w/v) NaCl (optimum, 0% NaCl), pH 6.0–9.0 (optimum, 7.0–8.0), and 15–42 °C (optimum, 30 °C). Catalase and oxidase positive. Starch and casein are not hydrolyzed. Nitrate cannot be reduced. Urease and β-galactosidase are negative. Can assimilate glucose, mannose, arabinose, mannitol, and malic acid. Voges-Proskauer test is positive. Negative for fermentation of mannose, sorbitol, rhamnose, and melibiose. In the API ZYM system, positive for alkaline phosphatase, leucine arlyamidase, acid phosphatase, naphthol-AS-BI-phosphohydrolase, β-glucuronidase. The following carbon sources are utilized: d-cellobiose, gentiobiose, d-mannose, d-fructose, d-galactose, myo-inositol, glycyl-l-proline, l-alanine, l-aspartic acid, l-serine, d-galacturonic acid, d-glucuronic acid, l-malic acid, bromo-succinic acid, β-hydroxy- d, l-butyric acid, acetoacetic acid, acetic acid. l-arginine, 3-methyl glucose, and d-turanose are weakly utilized. The major cellular fatty acids in strain 24NRT are summed feature 8 and C19:0 cyclo ω8c. The genome size of strain 24NRT is 5.22 Mb. The DNA G+C content is 60.3 mol %. The type strain is 24NRT (= ACCC 61588T = JCM 33731T), isolated from the bulbs of Lilium pumilum in the Hebei Province, PR China.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Neorhizobium » Neorhizobium lilii
Parent
Neorhizobium ncbigtdb
Pseudonyms
  • Neorhizobium lilium (Original, corrected name)

Genomics

Accession
NCBI Assembly: GCF_004053875.1 [NCBI]
Cultures
Strain sc|0039537 Pt
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.1%
  • Contamination: 0.9%
  • Quality: 93.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 60.3%
  • Coding Density: 89.02%
  • Codon Table: 11
  • N50: 1,301,730 bp
  • Contigs: 16
  • Largest Contig: 1,313,281 bp
  • Assembly Length: 5,222,315 bp
  • Ambiguous Assembly Fraction: 0.0038%
Automated checks
Complete

Last modified over 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago and claimed over 1 year ago by Van Lill, Melandre
Submitted
Over 1 year ago by Van Lill, Melandre
Curators
Endorsed
Over 1 year ago by St. John, Emily
Validated
Over 1 year ago by St. John, Emily
Date of priority
2025-03-20 05:55 PM (UTC)

Publications
1

Citation Title
Liu et al., 2020, Archives of Microbiology Neorhizobium lilium sp. nov., an endophytic bacterium isolated from Lilium pumilum bulbs in Hebei province
Effective publication



© 2022-2026 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:ttb3bgyb