Phyllobacterium pellucidum


Citation

Formal styling
Phyllobacterium pellucidum Park et al., 2021 (priority 2025)
Effective publication
Park et al., 2021
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ohfkumi1 (validated)
Canonical URL
https://seqco.de/i:49633

Nomenclature

Rank
Species
Syllabication
pel.lu'ci.dum
Etymology
L. neut. adj. pellucidum, transparent
Nomenclatural type
NCBI Assembly: GCF_013327855.1
Reference strain
Strain sc|0040536: BT25 = KCTC 62765 = NBRC 114381 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The bacteria cells are 1.8–2.0 μm in length and 1.2–1.3 μm in width, Gram-negative, rod-shaped, and produce white-colored colonies when grown on R2A at 25 °C for 3 days. Growth occurs at 15–37 °C. Growth is observed at pH values of 5.0–8.0 and NaCl concentrations up to 2% (w/v). Catalase and oxidase are positive. In API 20NE test, the BT25T strain is positive for arginine dihydrolase, urease, and gelatin hydrolysis; weakly positive for assimilation of d-glucose, l-arabinose, d-mannose, d-mannitol, N-acetyl-d-glucosamine, and l-malate. In the API ZYM test, the BT25T strain is weakly positive for leucine arylamidase, acid phosphatase, and naphthol-AS-BI-phosphohydrolase, but negative for other enzyme activities. The major cellular fatty acids are summed feature 8 (C18:1 ω7c/C18:1 ω6c), cyclo-C19:0 ω8c, and C16:0. Menaquinone Q-10 is the predominant respiratory quinone. Phosphatidylethanolamine, phosphatidylmonomethylethanolamine, phosphatidylglycerol, phosphatidylcholine, an unidentified phospholipid, and an unidentified aminolipid are present in polar lipid profile. The whole-genome sequence of the isolate contains 4,660,625 bp with a 59.1% G + C content. The BT25T strain (KCTC = 62765T, NBRC = 114381T) was isolated from a soil sample in South Korea (37°51′29.2″ N 127°08′38.0″ E). The NCBI GenBank/EMBL/DDBJ accession numbers for the BT25T 16S rRNA gene sequence is MN658537.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Phyllobacteriaceae » Phyllobacterium » Phyllobacterium pellucidum
Parent
Phyllobacterium ncbigtdb

Genomics

Accession
NCBI Assembly:GCF_013327855.1
Cultures
Strain sc|0040536
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
109.0 ×
Source
Other features
  • G+C Content: 59.1%
  • Coding Density: 89.74%
  • Codon Table: 11
  • N50: 1,082,216 bp
  • Contigs: 16
  • Largest Contig: 1,609,164 bp
  • Assembly Length: 4,660,625 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 12 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
12 months ago and claimed 9 months ago by Van Lill, Melandre
Submitted
9 months ago by Van Lill, Melandre
Curators
Validated
6 months ago by Rodriguez-R, Luis M
Date of priority
2025-03-20 07:17 PM (UTC)

Publications
1

Citation Title
Park et al., 2021, Archives of Microbiology Phyllobacterium pellucidum sp. nov., isolated from soil
Effective publication



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