JSONPDF

Pseudaminobacter pseudosoli

Citation

Formal styling
Pseudaminobacter pseudosoli corrig. Zhang et al., 2022 (priority 2025)
Effective publication
Zhang et al., 2022
Corrigendum
In SeqCode Registry from “Pseudaminobacter soli” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ua-gfau6 (validated)
Canonical URL
https://seqco.de/i:49634

Nomenclature

Rank
Species
Syllabication
pseu.do.so'li
Etymology
Gr. neut. adj. pseudes, false; L. neut. n. solum, soil, and a specific epithet of a Pseudaminobacter species; L. gen. n. pseudosoli, the false Pseudaminobacter soli
Notes
The proposed name in the effective publication was changed to Pseudaminobacter pseudosoli in the SeqCode Registry to resolve the synonymy introduced with this name to Pseudaminobacter soli (Nguyen et al. 2015) Li et al. 2025. 
Nomenclatural type
NCBI Assembly: GCF_014595955.1
Reference strain
Strain sc|0040416: HC19 = KCTC 82870 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are Gram stain-negative, strictly aerobic, rod-shaped, 1.2–2.5 μm in length and 0.5–0.8 μm in width and motile. The colonies on R2A agar are non-pigmented, white and moist after 3 days of incubation at 30 °C. Grow on R2A, but not on LB medium. Growth occurs at 15–30 °C (optimum 30 °C), at pH 5.0–8.0 (optimum 7.0), and with 0–2.0% (w/v) NaCl (optimum 1.0%). Positive for nitrite reduction and hydrolysis of aesculin, alkaline phosphatase, esterase (C4), esterase lipase (C8), acid phosphatase, naphthol-AS-BI-phosphohydrolase and α-glucosidase. The major polar lipids are PME, DPG, PG, PC and PE. The predominant cellular fatty acids are C19:0 cyclo ω8c and C18: 1ω7c. The major quinone was ubiquinone Q-10. The G+C content is 63.3 mol%.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Phyllobacteriaceae » Pseudaminobacter » Pseudaminobacter pseudosoli
Parent
Pseudaminobacter gtdb
Pseudonyms
  • Pseudaminobacter soli (Original, corrected name)

Genomics

Accession
NCBI Assembly:GCF_014595955.1
Cultures
Strain sc|0040416
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.1%
  • Contamination: 0.9%
  • Quality: 93.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 63.3%
  • Coding Density: 87.23%
  • Codon Table: 11
  • N50: 339,152 bp
  • Contigs: 51
  • Largest Contig: 681,404 bp
  • Assembly Length: 6,106,750 bp
  • Ambiguous Assembly Fraction: 0.039%
Automated checks
Complete
See additional details
Last modified about 2 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
12 months ago and claimed 9 months ago by Van Lill, Melandre
Submitted
9 months ago by Van Lill, Melandre
Curators
Validated
5 months ago by St. John, Emily
Date of priority
2025-03-20 04:24 PM (UTC)

Publications
1

Citation Title
Zhang et al., 2022, Current Microbiology Pseudaminobacter soli sp. nov., Isolated from Paddy Soil Contaminated with Heavy Metals
Effective publication


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:ua-gfau6