Ciceribacter sichuanensis


Citation

Formal styling
Ciceribacter sichuanensis Zhang et al., 2024 (priority 2025)
Effective publication
Zhang et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:aex0itc5 (validated)
Canonical URL
https://seqco.de/i:49638

Nomenclature

Rank
Species
Syllabication
si.chuan.en'sis
Etymology
N.L. masc. adj. sichuanensis, pertaining to Sichuan Province, China
Nomenclatural type
NCBI Assembly: GCF_024055605.1
Reference strain
Strain sc|0039554: S101 = CGMCC 1.61309 = GDMCC 1.3292 = JCM 35649 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells of C. sichuanensis are Gram-negative (approximately 0.9 × 2.2 μm), rod-shaped and aerobic. Colonies appear white, smooth, circular and convex on YMA plates (pH 7.0). Growth occurs at 20–40 °C (optimum, 28 °C), pH 4.0–10.0 (optimum, pH 7.0) and with 0–2% (w/v) NaCl (optimum, 0.01%). Catalase and oxidase are negative. Cells are positive for assimilation of d-maltose, d-trehalose, d-cellobiose, gentiobiose, sucrose, d-turanose, α-d-lactose, β-methyl-d-glucoside, d-salicin, α-d-glucose, d-mannose, d-fructose, d-galactose, d-fucose, l-fucose, l-rhamnose, inosine, d-sorbitol, d-mannitol, d-arabitol, myo-Inositol, glycerol, l-alanine, pectin, l-lactic acid, d-malic acid, l-malic acid, bromo-succinic acid, γ-amino-butrytic acid, β-hydroxy-d, lbutyric acid, acetoacetic acid, propionic acid, acetic acid, formic acid, 3-methyl glucose, l-arginine, l-glutamic acid, l-histidine, l-pyroglutamic acid, l-serine, glucuronamide, quinic acid, methyl pyruvate and d-lactic acid methyl ester. Acid is produced from d-arabinose, xylitol, d-dextrinose, l-arabinol, mannitol, l-arabinose, d-ribose, d-xylose, d-galactose, d-glucose, d-fructose, d-mannose, l-rhamnose, inositol, sorbitol, esculin, salicylin, d-cellbiose, d-maltose, d-sucrose, d-trehalose, d-turanose, d-lyxose, d-tagatose, d-fucose, l-fucose and d-arabitol. The major cellular fatty acids are summed feature 8 (C18:1 ω7c/C18:1 ω6c) and C19:0 cyclo ω8c. UQ-10 is the predominant respiratory quinone. The polar lipid profile includes diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylmethyl ethanolamine (PME), phosphatidyl ethanolamine (PE), amino phospholipid (AP), unidentified phosphoglycolipid and unidentified amino-containing lipids. The G + C content of the genomic DNA is 61.1–61.3 mol%. The type strain S101T (CGMCC 1.61309 T = GDMCC 1.3292 T = JCM 35649 T) was isolated from root nodules of Glycine max in Guangyuan, Sichuan, PR China. The GenBank accession numbers for the 16S rRNA gene and the whole genome sequences of strain S101T are ON342879 and GCA_024055605, respectively. The GenBank accession numbers of strain S153 are ON342889 for the 16S rRNA gene and GCA_023701565 for the whole genome sequence.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Ciceribacter » Ciceribacter sichuanensis
Parent
Ciceribacter ncbi

Genomics

Accession
NCBI Assembly:GCF_024055605.1
Cultures
Strain sc|0039554
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
250.0 ×
Source
Other features
  • G+C Content: 61.1%
  • Coding Density: 88.77%
  • Codon Table: 11
  • N50: 482,508 bp
  • Contigs: 29
  • Largest Contig: 1,303,029 bp
  • Assembly Length: 5,486,656 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 6 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
12 months ago and claimed 9 months ago by Van Lill, Melandre
Submitted
9 months ago by Van Lill, Melandre
Curators
Validated
6 months ago by St. John, Emily
Date of priority
2025-03-20 06:18 PM (UTC)

Publications
1

Citation Title
Zhang et al., 2024, Antonie van Leeuwenhoek Ciceribacter sichuanensis sp. nov., a plant growth promoting rhizobacterium isolated from root nodules of soybean in Sichuan, China
Effective publication



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