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Oederibacterium danicumTs

Citation

Formal styling
Oederibacterium danicumTs Sereika et al., 2025
Effective publication
Sereika et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:vwa_l78e (validated)
Canonical URL
https://seqco.de/i:49756

Nomenclature

Rank
Species
Syllabication
da'ni.cum
Etymology
N.L. neut. adj. danicum, Danish, named after Denmark, the country from which the type genome originates.
Nomenclatural type
NCBI Assembly: GCA_965112635.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Species represented by a single and circular metagenome-assembled genome (MAG), recovered from a Danish lake sediment, as part of the Microflora Danica project. The species lineage is based on the phylogeny of 120 concatenated bacterial protein markers and ANI-based classification to GTDB R226. The species is proposed to serve as the nomenclatural type for the Oederibacterium genus, named after Georg Christian Oeder (1728-1791) – scientist who initiated the Flora Danica project (1753-1883).
Classification
Bacteria » Oederibacteriota » Oederibacteriia » Oederibacteriales » Oederibacteriaceae » Oederibacterium » Oederibacterium danicumTs
Parent
Oederibacterium

Genomics

Accession
NCBI Assembly:GCA_965112635.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.81%
  • Contamination: 0.03%
  • Quality: 97.66
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
50.0 ×
Source
Other features
  • G+C Content: 51.5%
  • Coding Density: 91.63%
  • Codon Table: 11
  • N50: 2,876,006 bp
  • Contigs: 1
  • Largest Contig: 2,876,006 bp
  • Assembly Length: 2,876,006 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM2 quality scores
Automated checks
Complete
See additional details
Last modified 4 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
9 months ago by Sereika, Mantas
Submitted
4 months ago by Sereika, Mantas
Curators
Validated
4 months ago by Rodriguez-R, Luis M
Date of priority
2025-07-26 03:43 PM (UTC)

Publications
1

Citation Title
Sereika et al., 2025, Nature Microbiology Genome-resolved long-read sequencing expands known microbial diversity across terrestrial habitats
Effective publication


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