Fontibacterium boreale


Citation

Formal styling
Fontibacterium boreale Fernandes et al., 2025
Effective publication
Fernandes et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:gnukuc44 (validated)
Canonical URL
https://seqco.de/i:49872

Nomenclature

Rank
Species
Syllabication
bo.re.a'le
Etymology
L. neut. adj. boreale, pertaining to the boreal region of the Northern hemisphere
Nomenclatural type
NCBI Assembly: GCA_903909545.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Type genome is Fontibacterium boreale Umea-bin-09620 (GCA_903909545.1), a metagenome-assembled genome (MAG) assembled from 1-5 m depth from Lake Bjarntjarnan, Sweden (date: 2018-01-01/07). Umea-bin-09620 has a genome size of 1 Mbp with a genomic GC content of 30.2% and contains 20 tRNAs. The genome is of high quality, consisting of 243 contigs, with a completeness of 96.4%, contamination of 0.1% and strain heterogeneity of 0% as assessed with checkM. The metagenome was assembled with Megahit (version 1.1.13) from short-read sequencing (Illumina MiSeq). Metagenomic fragment recruitment of >600 samples from five continents indicate that the species is present mainly in boreal lakes in Europe and North America. The closest cultivated relatives are Fontibacterium commune, syn. ‘Candidatus Fonsibacter ubiquis’ LSUCC0530 (GCF_002688585.1; later reclassified to ‘Ca. Allofontibacter communis’), with an average amino acid identity of 82.49% and average nucleotide identity of 81.54 % and another newly proposed species, Fontibacterium abundans MiE-29 (GCA_965235095.1), with an AAI of 84.48% and an ANI of 83.54 %. Current GTDB classification (R220): d__Bacteria; p__Pseudomonadota; c__Alphaproteobacteria; o__Pelagibacterales; f__Pelagibacteraceae; g__Fonsibacter; s__.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Pelagibacterales » Pelagibacteraceae » Fontibacterium » Fontibacterium boreale
Parent
Fontibacterium

Genomics

Accession
NCBI Assembly:GCA_903909545.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.4%
  • Contamination: 0.1%
  • Quality: 95.9
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 13 amino acids
Sequencing depth
1.0 ×
Source
Other features
  • G+C Content: 30.2%
  • Coding Density: 95.93%
  • Codon Table: 11
  • N50: 4,824 bp
  • Contigs: 243
  • Largest Contig: 22,600 bp
  • Assembly Length: 976,884 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
This is a metagenome-assembled genome (MAG) that was assembled with megahit and binned with metabat (binning parameters: min_len:1500,min_bin_size:10000,maxP:93,minS:50). The sequencing depth is unknown and was thus set to 1x. Completeness and contamination were assessed with CheckM. rRNA genes were predicted with barrnap v0.9, tRNA genes were predicted with tRNAscan v1.4. Although the MAG is of high quality (96.4% completeness), it does not contain any rRNA genes and tRNA genes for only 13 amino acids. 
Automated checks
Complete

Last modified 7 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
8 months ago by Salcher, Michaela M
Submitted
3 months ago by Salcher, Michaela M
Curators
Validated
2 months ago by Rodriguez-R, Luis M
Date of priority
2025-08-28 03:13 PM (UTC)

Publications
1

Citation Title
Fernandes et al., 2025, Nature Microbiology Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium
Effective publication



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