Aquilimus communisTs


Citation

Formal styling
Aquilimus communisTs Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51025

Nomenclature

Rank
Species
Syllabication
com.mu'nis
Etymology
L. masc. adj. communis, common
Nomenclatural type
Genome sc|0003638 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. The species name ‘communis’ refers to the fact that the specie is found in a wide range of water environments, from rivers and bays to freshwater lakes.
Brief description. The genome of A. communis MZLE-42 (ENA accession number GCA_965268555) had a coding density of 96.78%, and the circular, complete genome has a size of 1,377,870 bp. The species has a GC content of 44.9%, which is similar to other representatives of this order. It possesses one rRNA operon and 39 tRNA genes. It was isolated from the epilimnion (0.5 m depth) of the Žlutice Reservoir, but recruitment analysis also show that it is present in the Římov Reservoir (Czech Republic), Lake Biwa (Japan), and in Delaware River and Bay (USA). It has an average nucleotide identity between 77 – 82% with other isolates on this genus, the closest one being A. zluticensis MZLE-12. Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Nanopelagicales; f__Nanopelagicaceae; g__AAA044-D11;s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Aquilimus » Aquilimus communisTs
Parent
Aquilimus

Genomics

Accession
NCBI Assembly: GCA_965268555.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 97.2%
  • Contamination: 2.8%
  • Quality: 83.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 44.91%
  • Coding Density: 95.02%
  • Codon Table: 11
  • N50: 1,377,870 bp
  • Contigs: 1
  • Largest Contig: 1,377,870 bp
  • Assembly Length: 1,377,870 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome of a culture that was harvested by filtration on 0.22 µm filters; DNA was extracted with the Quiagen MagAttract HMW DNA kit. Sequencing was done with Illuminia Novaseq 6000, trimming of reads with BBMap v36.x, assembly with SPAdes v3.12.0. The genome was manually curated to a circular chromosome in Geneious 10 by repeated rounds of read mapping. Completeness and contamination were assessed with CheckM, but as the genome consists of a circular chromosome, it should be complete without any contamination.
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
2 days ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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