Panacibacter polaris

Citation

Formal styling

Panacibacter polaris Tan et al., 2026

Effective publication

Tan et al., 2026

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:_7w3mg8c (validated)

Canonical URL

https://seqco.de/i:51192

Nomenclature

Rank

Species

Syllabication

po.la'ris

Etymology

L. masc. adj. polaris, of, or pertaining to, a pole

Nomenclatural type

NCBI Assembly: GCA_965610815.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The type material is the metagenome assembled genome BH-10_BAC2 recovered from soil from Bunger Hills, East Antarctica. The MAG consists of 5.9 Mbp in 81 contigs with an estimated completeness of 100% and 0.07% contamination, 16S (1529 bp) and 23S (2541 bp) genes, and 48 tRNAs (21 unique: 20 standard plus tRNA-fMet). The GC content of this MAG is 38.5%. Predicted to aerobically oxidise CO, and reduce nitrite (NO-forming nitrite reductase). Genome also harbours a catechol 2,3-dioxygenase [EC:1.13.11.2] and a sensory rhodopsin.

Classification

Bacteria » Bacteroidota » Chitinophagia » Chitinophagales » Chitinophagaceae » Panacibacter » Panacibacter polaris

Parent

Panacibacter

Genomics

Accession

NCBI Assembly:GCA_965610815.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.07%
• Quality: 99.65

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 78.0%)
• tRNAs for 20 amino acids

Sequencing depth

90.67 ×

Source

• BioSample: ERS25059173
• And 6 more…

Other features

• G+C Content: 38.53%
• Coding Density: 84.9%
• Codon Table: 11
• N50: 115,105 bp
• Contigs: 81
• Largest Contig: 287,092 bp
• Assembly Length: 5,881,798 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness estimates calculated with CheckM2 (v1.0.1). rRNA genes obtained with barrnap (v0.9) and Infernal (v1.1.4) with Rfam (v14.10). tRNAs detected with tRNAscan-SE (v2.0.12).

Automated checks

Complete

See additional details

---

Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_965610815.1
• Wikispecies: Panacibacter polaris

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified about 15 hours ago
• Submission process status
• Quality checks before valid publication

Registered

9 months ago and claimed 9 months ago by Vázquez-Campos, Xabier

Submitted

9 months ago by Vázquez-Campos, Xabier

Curators

• Palmer, Marike (nomenclature)
• Valero Tebar, Juan (genomics)

Endorsed

7 months ago by Palmer, Marike

Validated

About 15 hours ago by Palmer, Marike

Date of priority

2026-02-23 11:19 PM (UTC)