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Frigidisolicola castellviaeTs

Citation

Formal styling
Frigidisolicola castellviaeTs Tan et al., 2026
Effective publication
Tan et al., 2026
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:_7w3mg8c (validated)
Canonical URL
https://seqco.de/i:51218

Nomenclature

Rank
Species
Syllabication
cas.tell.vi.ae
Etymology
N.L. gen. n. castellviae, in honor of Josefina Castellví, the first Spanish woman to participate in and coordinate an international expedition to Antarctica
Nomenclatural type
NCBI Assembly: GCA_965609575.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The type material is the metagenome assembled genome BH-10_PSE17 recovered from soil from Bunger Hills, East Antarctica. The MAG consists of 4.2 Mbp in 112 contigs with an estimated completeness of 94.52% and 0.82% contamination, 16S (1531 bp), 23S (1860 bp), and 5S (114 bp) genes, and 45 tRNAs (21 unique: 19 standard plus tRNA-fMet and tRNA-SeC). The GC content of this MAG is 66.5%. Predicted to degrade hydrocarbons (long-chain alkane monooxygenase [EC:1.14.14.28], and phthalate 4,5-dioxygenase [EC:1.14.12.7]).
Classification
Bacteria » Pseudomonadota » Betaproteobacteria » Burkholderiales » Burkholderiaceae » Frigidisolicola » Frigidisolicola castellviaeTs
Parent
Frigidisolicola

Genomics

Accession
NCBI Assembly:GCA_965609575.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.52%
  • Contamination: 0.82%
  • Quality: 90.42
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 57.0%)
  • tRNAs for 20 amino acids
Sequencing depth
45.8 ×
Source
Other features
  • G+C Content: 66.52%
  • Coding Density: 94.71%
  • Codon Table: 11
  • N50: 77,386 bp
  • Contigs: 112
  • Largest Contig: 210,085 bp
  • Assembly Length: 4,153,407 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness estimates calculated with CheckM2 (v1.0.1). rRNA genes obtained with barrnap (v0.9) and Infernal (v1.1.4) with Rfam (v14.10). tRNAs detected with tRNAscan-SE (v2.0.12).
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
10 months ago and claimed 10 months ago by Vázquez-Campos, Xabier
Submitted
10 months ago by Vázquez-Campos, Xabier
Curators
Endorsed
7 months ago by Palmer, Marike
Validated
4 days ago by Palmer, Marike
Date of priority
2026-02-23 11:19 PM (UTC)

Publications
1

Citation Title
Tan et al., 2026, Communications Earth & Environment Persistent petroleum pollution shifts soil microbial responses in Bunger Hills, East Antarctica
Effective publication


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