Planktophila hypolimnetica


Citation

Formal styling
Planktophila hypolimnetica Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51476

Nomenclature

Rank
Species
Syllabication
hy.po.lim.ne.ti'ca
Etymology
Gr. prep. hypo, below, under; N.L. fem. adj. limnetica, of a lake; N.L. fem. adj. hypolimnetica, from the hypolimnion of lakes
Nomenclatural type
Genome sc|0004092 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named ‘hypolimnetica’ after the water layer from which it was isolated from Římov Reservoir, Czech Republic.
Brief description. Planktophila hypolimnetica MRH-37 (ENA accession number GCA_965268225) was isolated from the hypolimnion (30m depth) of Římov Reservoir, Czech Republic (date: 2021-04-06) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,381,774 bp, a GC content of 48.46%, and a coding density of 95.9%. It encodes one rRNA operon and 38 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, as well as the capacity to de novo synthesize retinal. It encodes for both oxygenic and anoxygenic parts of the pentose phosphate pathway. Recruitment analysis showed that it is present both in the epilimnion and hypolimnion of Římov Reservoir. The closest cultivated species is Planktophila grossartii MRE-195, having an average nucleotide identity of 86.8%. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila hypolimnetica
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965268225.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 48.5%
  • Coding Density: 95.35%
  • Codon Table: 11
  • N50: 1,381,774 bp
  • Contigs: 1
  • Largest Contig: 1,381,774 bp
  • Assembly Length: 1,381,774 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
2 days ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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