Planktophila zluticensis


Citation

Formal styling
Planktophila zluticensis Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51484

Nomenclature

Rank
Species
Syllabication
z.lu.ti.cen'sis
Etymology
L. fem. adj. zluticensis, from the Žlutice Reservoir in the Czech Republic.
Nomenclatural type
Genome sc|0004100 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named after the Žlutice Reservoir, Czech Republic, the place from which the representative strain was isolated.
Brief description. Planktophila zlutica MZLE-14 (ENA accession number GCA_965268005) was isolated from the epilimnion (5m depth) of the eutrophic Žlutice Reservoir, Czech Republic (date: 2021-04-07) and it is the only isolated representative of the species. It has a complete circular genome of 1,406,539 bp, a GC content of 46.1% and a coding density of 95.9%. The closest isolated species is Planktophila warneckii RE-8, with which it shares an average nucleotide identity of 87.8%. It encodes one rRNA operon and 39 tRNA genes; additionally, it has both actinorhodopsin and heliorhodopsin but lacks the capacity for retinal biosynthesis. Also, it lacks the oxidative part of the pentose phosphate pathway but can synthesize all amino acids. It has a limited distribution and low abundance, being recovered in the recruitment analysis only from the Žlutice and Římov Reservoirs in Czech Republic. The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota; c__Actinomycetia;o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila zluticensis
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965268005.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 46.0%
  • Coding Density: 95.48%
  • Codon Table: 11
  • N50: 1,406,539 bp
  • Contigs: 1
  • Largest Contig: 1,406,539 bp
  • Assembly Length: 1,406,539 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
3 days ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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