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Nitrososappho danicaTs

Citation

Formal styling
Nitrososappho danicaTs Singleton et al., 2025
Effective publication
Singleton et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xueh5m88 (validated)
Canonical URL
https://seqco.de/i:54884

Nomenclature

Rank
Species
Syllabication
da.ni'ca
Etymology
N.L. fem. adj. danica, Danish, referring to the origin of the sample and wide distribution in Denmark
Nomenclatural type
NCBI Assembly: GCA_974504955.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Species established on the basis of ANI comparisons to GTDB R226. The type genome was recovered from urban sediment of a rainwater basin. Based on metabolic reconstruction, Nitrososappho danica is aerobic, capable of ammonia oxidation, and encodes genes for urea use. 
Classification
Archaea » Thermoproteota » Nitrososphaeria » Nitrososphaerales » Nitrososphaeraceae » Nitrososappho » Nitrososappho danicaTs
Parent
Nitrososappho

Genomics

Accession
NCBI Assembly:GCA_974504955.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.7%
  • Contamination: 0.29%
  • Quality: 90.25
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
46.1 ×
Source
Other features
  • G+C Content: 38.0%
  • Coding Density: 74.58%
  • Codon Table: 11
  • N50: 342,656 bp
  • Contigs: 8
  • Largest Contig: 521,256 bp
  • Assembly Length: 2,212,647 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimates are by CheckM2
Automated checks
Complete
See additional details
Last modified 3 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 2 months ago by Sereika, Mantas
Submitted
About 1 month ago by Sereika, Mantas
Curators
Validated
1 day ago by St. John, Emily
Date of priority
2025-12-04 09:55 AM (UTC)

Publications
1

Citation Title
Singleton et al., 2025, Nature The Microflora Danica atlas of Danish environmental microbiomes
Effective publication


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