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Candidatus Methylumidiphilus alinenensis

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Citation

Formal styling
“Candidatus Methylumidiphilus alinenensis” Oren et al., 2020
Effective publication
Oren et al., 2020
SeqCode status
Automated discovery
Canonical URL
https://seqco.de/i:756

Nomenclature

Rank
Species
Syllabication
a.li.ne.nen'sis.
Etymology
N. L. masc. adj. alinenensis, pertaining to Lake AlinenMustajärvi, Finland
Nomenclatural type
NCBI Assembly: GCA_003242955.1

Taxonomy

Description
Among 66 MAGs classified as Ca. Methylumidiphilus (with completeness over 40% and contamination less than 5%) originating from lakes in Finland, Sweden and Switzerland as well as from ponds in Canada, we could find 5 MAGs each containing one 1532 bp long sequence spanning the V1-V9 regions of the 16S rRNA gene. After removal of sequence redundancy, this resulted in two unique 16S rRNA gene sequences. These sequences represented two different putative species, i.e. Ca. Methylumidiphilus alinenensis (Genbank accession: OK236221) as well as another so far unnamed species of Ca. Methylumidiphilus (Genbank accession: OK236220). We suggest that including these two sequences in reference databases will enhance 16S rRNA gene - based detection of members of this genus from environmental samples.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Methylococcales » Methylococcaceae » Candidatus Methylumidiphilus » Candidatus Methylumidiphilus alinenensis
Parent
Candidatus Methylumidiphilus gtdb

Genomics

Accession
NCBI Assembly:GCA_003242955.1
Estimated Quality Metrics
  • Completeness: 74.5%
  • Contamination: 2.8%
  • Quality: 60.5
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Other features
  • G+C Content: 51.8%
  • Coding Density: 86.0%
  • Codon Table: 11
  • N50: 23,141 bp
  • Contigs: 597
  • Largest Contig: 97,133 bp
  • Assembly Length: 6,572,141 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 11 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
SeqCode user miguel_uibk almost 3 years ago

Publications
3

Citation Title
Rissanen et al., 2022, Aquatic Microbial Ecology 16S rRNA gene sequences of Candidatus Methylumidiphilus (Methylococcales), a putative methanotrophic genus in lakes and ponds
Rissanen et al., 2021, 16S rRNA gene sequences of Candidatus Methylumidiphilus (Methylococcales), a putative methanotrophic genus in lakes and ponds
Oren et al., 2020, International Journal of Systematic and Evolutionary Microbiology Lists of names of prokaryotic Candidatus taxa
Effective publication


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