Publications

4359

Abstract Xi.phi.ne.ma.to.bac'ter. Gr. neut. n. Xiphinema, ‐atos the genus name of the host organism; N.L. masc. n. bacter the equivalent of Gr. neut. n. baktron a rod; N.L. masc. n. Xiphinematobacter the rod‐shaped microbe associated with Xiphinema . Full‐grown cells are rod‐shaped with rounded ends, 0.7–1.0 × 2.1–3.2 μm ; however, cells in the J 1 (first juvenile) stage of nematode development have a wrinkled, pleomorphic shape. The longer entities usually consist of a mother cell from which a daughter cell is budding, giving rise to serial pairs typical of this bacterial genus. In thin sections cells have two or three membranes consisting of, from inside to outside, a cytoplasmic membrane, an electron‐dense outer membrane, and, in many individuals, a vacuolar membrane which is probably derived from the host cell membrane and which often shows discontinuities. No peptidoglycan layer is evident ; however, a periplasmic hexagonally arrayed monolayer of 10 nm protein units is sometimes present. Gram‐stain‐negative, nonmotile, and nonsporulating. DNA is often condensed at cell poles . Bacteria live as obligate cytoplasmic symbionts with maternal transmission in nematodes of the Xiphinema americanum group ( Nematoda, Longidoridae ), in which they are presumed to induce thelytokous ( mother‐to‐daughter ) parthenogenesis . DNA G + C content ( mol %): not determined. Type species : “ Candidatus Xiphinematobacter brevicolli ” Vandekerckhove, Willems, Gillis and Coomans 2000, 2203. Taxonomic and Nomenclature Notes According to the List of Prokaryotic names with Standing in Nomenclature (LPSN), the taxonomic status of the genus Candidatus Xiphinematobacter is: preferred name (not correct name) (last update, February 2025) * . LPSN classification: Bacteria / Pseudomonadati / Verrucomicrobiota / Terrimicrobiia / Terrimicrobiales / Chthoniobacteraceae / Candidatus Xiphinematobacter Candidatus Xiphinematobacter could not be recovered in GTDB ** . * Meier‐Kolthoff et al. ( 2022 ). Nucleic Acids Res , 50 , D801 – D807 ; DOI: 10.1093/nar/gkab902 ** Parks et al. ( 2022 ). Nucleic Acids Res , 50 , D785 – D794 ; DOI: 10.1093/nar/gkab776

Abstract Cla.vi.chla.my'di.a. L. n. clava a knotty branch, rough stick, cudgel, club; N.L. fem. n. Chlamydia taxonomic name of a bacterial genus; N.L. fem. n. Clavichlamydia a club Chlamydia (the morphology of the bacteria includes the characteristic head‐and‐tail cells that have been described earlier from salmonid fish suffering from epitheliocystis). Pleomorphic or elongated , nonmotile , obligate intracellular bacteria , up to 2 μ m in length . Cells show a developmental cycle with morphologically distinct stages and thrive inside a host vacuole . Organisms were found within gill lesions of fish and are differentiated from all other chlamydiae by the morphology of the proposed elementary bodies , which show a characteristic head‐and‐tail form (Figure 1). Members have not yet been obtained in cell culture. Type species : “ Candidatus Clavichlamydia salmonicola ” corrig. Karlsen, Nylund, Watanabe, Helvik, Nylund and Plarre 2008. Taxonomic and Nomenclature Notes According to the List of Prokaryotic names with Standing in Nomenclature (LPSN), the taxonomic status of the genus Candidatus Clavichlamydia is: preferred name (not correct name) (last update, February 2025) * . LPSN classification: Bacteria / Pseudomonadati / Chlamydiota / Chlamydiia / Chlamydiales / Chlamydiaceae / Candidatus Clavichlamydia The genus Candidatus Clavichlamydia can also be recovered in the Genome Taxonomy Database (GTDB) as g__Clavichlamydia (version v220) ** . GTDB classification: d__Bacteria / p__Chlamydiota / c__Chlamydiia / o__Chlamydiales / f__Chlamydiaceae / g__Clavichlamydia * Meier‐Kolthoff et al. ( 2022 ). Nucleic Acids Res , 50 , D801 – D807 ; DOI: 10.1093/nar/gkab902 ** Parks et al. ( 2022 ). Nucleic Acids Res , 50 , D785 – D794 ; DOI: 10.1093/nar/gkab776

Abstract Mag.ne'to.bac.te'ri.um. Gr. n. magnes magnet, comb. form magneto‐; Gr. n. bakterion a small rod; M.L. neut. n. Magnetobacterium a magnetic rod. Rod‐shaped, large, magnetic cells occurring in freshwater sediments. The original description is based on bacteria enriched from the littoral sediment of a freshwater lake in Southern Germany (Chiemsee); similar types of bacteria were also observed in sediments of other freshwater lakes and ponds in Southern Germany and Brazil. Counts of active bacteria in different vertical layers of Chiemsee sediment indicated that “ Candidatus M. bavaricum” is a typical gradient organism, particularly adapted to zones characterized by low levels of oxygen, where it reaches the highest abundance (Spring et al., 1993). A minor fraction of these bacteria was also found in the anoxic zone, whereas high concentrations of oxygen can apparently not be tolerated by this bacterium over longer periods of time. Type species : “ Candidatus Magnetobacterium bavaricum ” Spring, Amann, Ludwig, Schleifer, van Gemerden and Petersen 1993, 2398. Taxonomic and Nomenclature Notes According to the List of Prokaryotic names with Standing in Nomenclature (LPSN), the taxonomic status of the genus Candidatus Magnetobacterium is: synonym (and no standing) (last update, February 2025) * . LPSN classification: Bacteria / Pseudomonadati / Nitrospirota / Nitrospiria / Nitrospirales / Nitrospiraceae / Candidatus Magnetobacterium The genus Candidatus Magnetobacterium can also be recovered in the Genome Taxonomy Database (GTDB) as g__Magnetobacterium (version v220) ** . GTDB classification: d__Bacteria / p__Nitrospirota / c__Thermodesulfovibrionia / o__Thermodesulfovibrionales / f__Magnetobacteriaceae / g__Magnetobacterium * Meier‐Kolthoff et al. ( 2022 ). Nucleic Acids Res , 50 , D801 – D807 ; DOI: 10.1093/nar/gkab902 ** Parks et al. ( 2022 ). Nucleic Acids Res , 50 , D785 – D794 ; DOI: 10.1093/nar/gkab776

Abstract Taxonomic and Nomenclature Notes According to the List of Prokaryotic names with Standing in Nomenclature (LPSN), the taxonomic status of the genus Candidatus Paracaedibacter is: preferred name (not correct name) (last update, February 2025) * . LPSN classification: Bacteria / Pseudomonadati / Pseudomonadota / Alphaproteobacteria / Holosporales / Candidatus Paracaedibacteraceae / Candidatus Paracaedibacter Candidatus Paracaedibacter could not be recovered in GTDB ** . * Meier‐Kolthoff et al. ( 2022 ). Nucleic Acids Res , 50 , D801 – D807 ; DOI: 10.1093/nar/gkab902 ** Parks et al. ( 2022 ). Nucleic Acids Res , 50 , D785 – D794 ; DOI: 10.1093/nar/gkab776