Seifert, Jana


Publications
3

Novel taxonomic and functional diversity of bacteria from the upper digestive tract of chicken

Citation
Rios-Galicia et al. (2023).
Names
Limosilactobacillus galli Limosilactobacillus avium Limosilactobacillus pulli “Clostridium anaeroviscerum” Limosilactobacillus viscerum Limosilactobacillus difficilis Ligilactobacillus hohenheimensis Clostridium butanoliproducens
Abstract
AbstractStrategies to increase the production rate of chicken for human consumption alter the natural process of microbial colonisation and the nutritional performance of the animal. The lack of sufficient reference genomes limits the interpretation of sequencing data and restrain the study of complex functions. In this study, 43 strains obtained from crop, jejunum and ileum of chicken were isolated, characterised and genome analysed to observe their metabolic profiles, adaptive strategies and t

Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus “Candidatus Sulfobium”

Citation
Zecchin et al. (2018). Applied and Environmental Microbiology 84 (5)
Names
Ca. Sulfobium Ca. Sulfobium mesophilum
Abstract
ABSTRACT Nitrospirae spp. distantly related to thermophilic, sulfate-reducing Thermodesulfovibrio species are regularly observed in environmental surveys of anoxic marine and freshwater habitats. Here we present a metaproteogenomic analysis of Nitrospirae bacterium Nbg-4 as a representative of this clade. Its genome was assembled from replicated metagenomes of rice paddy soil that was used to grow rice in the pres

Rice paddyNitrospiraeencode and express genes related to sulfate respiration: proposal of the new genusCandidatusSulfobium

Citation
Zecchin et al. (2017).
Names
Ca. Sulfobium Ca. Sulfobium mesophilum
Abstract
AbstractNitrospiraespp. distantly related to thermophilic, sulfate-reducingThermodesulfovibriospecies are regularly observed in environmental surveys of anoxic marine and freshwater habitats. However, little is known about their genetic make-up and physiology. Here, we present the draft genome ofNitrospiraebacterium Nbg-4 as a representative of this clade and analyzed itsin situprotein expression under sulfate-enriched and sulfate-depleted conditions in rice paddy soil. The genome of Nbg-4 was a