SeqCode Registry
cognitis nomina
  • About
  • Search
  • •
  • Login
  • Register
Authors Jarett

JSON
See as cards

Jarett, Jessica


Publications
2

CitationNamesAbstract
Ecological and genomic analyses of candidate phylum <scp>WPS</scp> ‐2 bacteria in an unvegetated soil Sheremet et al. (2020). Environmental Microbiology 22 (8) “Rubrimentiphilum” “Rubrimentiphilales” Ca. Rubrimentiphilum
Text
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs Eloe-Fadrosh et al. (2016). Nature Communications 7 (1) Kryptonium thompsonii Ts Kryptonium “Chryseopegocella kryptomonas” “Kryptoniota”
Text

Ecological and genomic analyses of candidate phylum <scp>WPS</scp> ‐2 bacteria in an unvegetated soil
Summary Members of the bacterial candidate phylum WPS‐2 (or Eremiobacterota) are abundant in several dry, bare soil environments. In a bare soil deposited by an extinct iron–sulfur spring, we found that WPS‐2 comprised up to 24% of the bacterial community and up to 10 8 cells per g of soil based on 16S rRNA gene sequencing and quantification. A single genus‐level cluster ( Ca. Rubrimentiphilum) predominated in bare soils but was less abundant in adjacent forest. Nearly complete genomes of Ca. Rubrimentiphilum were recovered as single amplified genomes (SAGs) and metagenome‐assembled genomes (MAGs). Surprisingly, given the abundance of WPS‐2 in bare soils, the genomes did not indicate any capacity for autotrophy, phototrophy, or trace gas metabolism. Instead, they suggest a predominantly aerobic organoheterotrophic lifestyle, perhaps based on scavenging amino acids, nucleotides, and complex oligopeptides, along with lithotrophic capacity on thiosulfate. Network analyses of the entire community showed that some species of Chloroflexi , Actinobacteria , and candidate phylum AD3 (or Dormibacterota) co‐occurred with Ca. Rubrimentiphilum and may represent ecological or metabolic partners. We propose that Ca. Rubrimentiphilum act as efficient heterotrophic scavengers. Combined with previous studies, these data suggest that the phylum WPS‐2 includes bacteria with diverse metabolic capabilities.
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
AbstractAnalysis of the increasing wealth of metagenomic data collected from diverse environments can lead to the discovery of novel branches on the tree of life. Here we analyse 5.2 Tb of metagenomic data collected globally to discover a novel bacterial phylum (‘Candidatus Kryptonia’) found exclusively in high-temperature pH-neutral geothermal springs. This lineage had remained hidden as a taxonomic ‘blind spot’ because of mismatches in the primers commonly used for ribosomal gene surveys. Genome reconstruction from metagenomic data combined with single-cell genomics results in several high-quality genomes representing four genera from the new phylum. Metabolic reconstruction indicates a heterotrophic lifestyle with conspicuous nutritional deficiencies, suggesting the need for metabolic complementarity with other microbes. Co-occurrence patterns identifies a number of putative partners, including an uncultured Armatimonadetes lineage. The discovery of Kryptonia within previously studied geothermal springs underscores the importance of globally sampled metagenomic data in detection of microbial novelty, and highlights the extraordinary diversity of microbial life still awaiting discovery.
Search