Genome sc|0001015


Database

NCBI Assembly

Accession

GCA_031287135.1

Genomics

Accession
NCBI Assembly:GCA_031287135.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.0%
  • Contamination: 0.0%
  • Quality: 91.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 51.0%)
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
91.0 ×
Source
Other features
  • G+C Content: 53.5%
  • Coding Density: 91.0%
  • Codon Table: 11
  • N50: 12,197 bp
  • Contigs: 118
  • Largest Contig: 42,085 bp
  • Assembly Length: 1,219,661 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2019-04-08
Location
Lat Lon: 52.443245 N 13.287523 E
Toponym
Geo Loc Name: Germany: BAM Federal Institute for Materials Research and Testing, Berlin
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: temperate woodland biome
Other
Host: Reticulitermes flavipes
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Metagenome of Reticulitermes flavipes : gut microbiota


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license