Genome sc|0001017

Genomics

Accession

NCBI Assembly:GCA_031267895.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.2%
• Contamination: 0.0%
• Quality: 93.2

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 17 amino acids

Sequencing depth

93.0 ×

Source

• BioSample: SAMN21241414

Other features

• G+C Content: 49.8%
• Coding Density: 86.53%
• Codon Table: 11
• N50: 33,272 bp
• Contigs: 72
• Largest Contig: 66,926 bp
• Assembly Length: 1,717,415 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN21241414

Date

Collection Date: 2013-11-14

Location

Lat Lon: 19.399181 N 101.000213 E

Toponym

Geo Loc Name: Thailand: Thung Chang

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Glyptotermes sp.

Package

Ncbi Submission Package: MIMAG.host-associated.6.0

Biosamplemodel: MIMAG.host-associated

Additional Accessions

SAMN19322076

All retrieved samples

• SAMN21241414: MIMAG Metagenome-assembled Genome sample from Candidatus Methanoplasma glyptotermitis

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Metadata retrieved about 1 month ago