Genome sc|0001344


Database

NCBI Assembly

Accession

GCA_031268145.1

Genomics

Accession
NCBI Assembly:GCA_031268145.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.32%
  • Contamination: 0.0%
  • Quality: 94.32
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 31.0%)
  • 1 23S rRNA (up to 13.0%)
  • tRNAs for 18 amino acids
Sequencing depth
94.0 ×
Source
Other features
  • G+C Content: 30.8%
  • Coding Density: 89.68%
  • Codon Table: 11
  • N50: 45,065 bp
  • Contigs: 47
  • Largest Contig: 117,626 bp
  • Assembly Length: 1,259,240 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2013-11-14
Location
Lat Lon: 19.399181 N 101.000213 E
Toponym
Geo Loc Name: Thailand: Thung Chang
Environment
Sample Type: metagenomic assembly
Isolation Source: termite gut
Env Broad Scale: terrestrial biome
Env Local Scale: woodland biome
Env Medium: tropical woodland biome
Other
Host: Glyptotermes sp.
Package
Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Metagenome of Glyptotermes sp. : gut microbiota


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