Genome sc|0001417


Database

NCBI Assembly

Accession

GCA_030765335.1

Genomics

Accession
NCBI Assembly:GCA_030765335.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.94%
  • Contamination: 0.75%
  • Quality: 95.19
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 7.0%)
  • 1 23S rRNA (up to 8.0%)
  • tRNAs for 19 amino acids
Sequencing depth
35.0 ×
Source
Other features
  • G+C Content: 37.25%
  • Coding Density: 93.47%
  • Codon Table: 11
  • N50: 53,877 bp
  • Contigs: 46
  • Largest Contig: 84,421 bp
  • Assembly Length: 1,339,195 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
IMG Annotation pipeline
CheckM1 from Williams et al 2021,  doi 10.3389/fmicb.2021.741077
CheckM2 from Seymour et al 2023,  doi 10.1038/s41564-022-01319-1  
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2006-12/2015-01 • 2008-12-01 • 2015-01-27 • 2015-08-01 • 2014-12-03 • 2014-12-04 • 2014-10-21 • 2014-10-20 • 2014-08-21 • 2014-08-20 • 2014-07-02 • 2014-02-15 • 2013-12-17 • 2013-11-27 • 2013-11-26 • 2013-11-25 • 2013-11-24
Location
Lat Lon: 68.4725 S 78.188 E • 68.4725 S 78.1880 E
Toponym
Geo Loc Name: Antarctica: Ace Lake
Environment
Sample Type: metagenomic assembly
Isolation Source: saline lake water • Filter • saline lake
Env Broad Scale: aquatic biome [ENVO:00002030]
Env Local Scale: saline lake [ENVO:0000002019]
Env Medium: saline water [ENVO:00002010]
Gold Ecosystem Classification: Environmental | Aquatic | Non-marine Saline and Alkaline | Saline | Unclassified
Other
Not detected
Package
Ncbi Submission Package: MIMAG.6.0Metagenome.environmental.1.0
Biosamplemodel: MIMAG • Metagenome or environmental
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Antarctic Ace Lake Metagenome 02UKH
Antarctic Ace Lake Metagenome 02UKC
Antarctic Ace Lake Metagenome 02UKA
Antarctic Ace Lake Metagenome 02UKM
Antarctic Ace Lake Metagenome 02UK1
Antarctic Ace Lake Metagenome 02UK8
Antarctic Ace Lake Metagenome 02UKK
Antarctic Ace Lake Metagenome 02UKF
Antarctic Ace Lake Metagenome 02UKE
Antarctic Ace Lake Metagenome 02UKL
Antarctic Ace Lake Metagenome 02UKX
Antarctic Ace Lake Metagenome 02UKG
Antarctic Ace Lake Metagenome 02UKS
Antarctic Ace Lake metagenome #1576
Antarctic Ace Lake metagenome #1574
Antarctic Ace Lake metagenome #1454
Antarctic Ace Lake metagenome #1400
Antarctic Ace Lake metagenome #866
Antarctic Ace Lake metagenome #801
Antarctic Ace Lake metagenome #732
Antarctic Ace Lake metagenome #653
Antarctic Ace Lake metagenome #600
Antarctic Ace Lake metagenome #549
Antarctic Ace Lake metagenome #474
Antarctic Ace Lake metagenome #419
Antarctic Ace Lake metagenome #333
Antarctic Ace Lake metagenome #293
Antarctic Ace Lake metagenome #229
Antarctic Ace Lake metagenome #185
Antarctic Ace Lake metagenome #141
Antarctic Ace Lake metagenome #50
Antarctic Ace Lake metagenome #5
Antarctic Ace Lake metagenome #1165
Antarctic Ace Lake metagenome #1077
Antarctic Ace Lake metagenome #1073
Antarctic Ace Lake metagenome #1004
Antarctic Ace Lake metagenome #935
Antarctic Ace Lake metagenome #472
Antarctic Ace Lake metagenome #369
Antarctic Ace Lake metagenome #91
Antarctic Ace Lake metagenome #1402
Antarctic Ace Lake metagenome #1237
Antarctic Ace Lake metagenome #1231
Antarctic Ace Lake metagenome #3
Antarctic Ace Lake metagenome #139
Antarctic Ace Lake metagenome #227
Antarctic Ace Lake metagenome #292
Antarctic Ace Lake metagenome #371
Antarctic Ace Lake metagenome #547
Antarctic Ace Lake metagenome #604
Antarctic Ace Lake metagenome #657
Antarctic Ace Lake metagenome #799
Antarctic Ace Lake metagenome #939
Antarctic Ace Lake metagenome #1075
Antarctic Ace Lake metagenome #1163
Antarctic Ace Lake metagenome #1331
Antarctic Ace Lake metagenome #1450
Antarctic Ace Lake metagenome #1506
Antarctic Ace Lake metagenome #1692
Antarctic Ace Lake metagenome #367
Antarctic Ace Lake metagenome #1504
Antarctic Ace Lake Metagenome 02UKD
Antarctic Ace Lake Metagenome 02UKJ
Antarctic Ace Lake Metagenome 02UK9
Antarctic Ace Lake Metagenome 02UKN
Antarctic Ace Lake Metagenome 02UKB
Antarctic Ace Lake metagenome #1699
Antarctic Ace Lake metagenome #1452
Antarctic Ace Lake metagenome #870
Antarctic Ace Lake metagenome #797
Antarctic Ace Lake metagenome #655
Antarctic Ace Lake metagenome #602
Antarctic Ace Lake metagenome #476
Antarctic Ace Lake metagenome #421
Antarctic Ace Lake metagenome #337
Antarctic Ace Lake metagenome #291
Antarctic Ace Lake metagenome #187
Antarctic Ace Lake metagenome #143
Antarctic Ace Lake metagenome #46
Antarctic Ace Lake metagenome #1
Antarctic Ace Lake metagenome #1159
Antarctic Ace Lake metagenome #1008
Antarctic Ace Lake metagenome #937
Antarctic Ace Lake metagenome #728
Antarctic Ace Lake metagenome #93
Antarctic Ace Lake metagenome #1572
Antarctic Ace Lake metagenome #1333
Antarctic Ace Lake metagenome #95
Antarctic Ace Lake metagenome #48
Antarctic Ace Lake metagenome #183
Antarctic Ace Lake metagenome #335
Antarctic Ace Lake metagenome #423
Antarctic Ace Lake metagenome #551
Antarctic Ace Lake metagenome #730
Antarctic Ace Lake metagenome #868
Antarctic Ace Lake metagenome #1006
Antarctic Ace Lake metagenome #1234
Antarctic Ace Lake metagenome #1398
Antarctic Ace Lake metagenome #1502
Antarctic Ace Lake metagenome #1696


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