JSON

Genome sc|0001418

Name

“Kaelpia imicola”

Database

NCBI Assembly

Accession

GCA_030765505.1

Genomics

Accession
NCBI Assembly:GCA_030765505.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.54%
  • Contamination: 0.03%
  • Quality: 97.39
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 7.0%)
  • 1 23S rRNA (up to 8.0%)
  • tRNAs for 19 amino acids
Sequencing depth
18.0 ×
Source
Other features
  • G+C Content: 37.73%
  • Coding Density: 93.21%
  • Codon Table: 11
  • N50: 78,421 bp
  • Contigs: 43
  • Largest Contig: 155,316 bp
  • Assembly Length: 1,457,239 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
IMG Annotation pipeline
CheckM1 from Williams et al 2021,  doi 10.3389/fmicb.2021.741077
CheckM2 from Seymour et al 2023,  doi 10.1038/s41564-022-01319-1  
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2006-12/2015-01
Location
Lat Lon: 68.4725 S 78.188 E
Toponym
Geo Loc Name: Antarctica: Ace Lake
Environment
Sample Type: metagenomic assembly
Isolation Source: saline lake water
Env Broad Scale: aquatic biome [ENVO:00002030]
Env Local Scale: saline lake [ENVO:0000002019]
Env Medium: saline water [ENVO:00002010]
Other
Not detected
Package
Ncbi Submission Package: MIMAG.6.0
Biosamplemodel: MIMAG
Additional Accessions
SAMN06267208, SAMN06267209, SAMN06267210, SAMN06267211, SAMN06267212, SAMN06267213, SAMN06267214, SAMN06267215, SAMN06267216, SAMN06267217, SAMN06267218, SAMN06267219, SAMN06267220, SAMN06267221, SAMN06267222, SAMN06343953, SAMN06343954, SAMN06343955, SAMN09200903, SAMN09200904, SAMN09200905, SAMN09200906, SAMN09200907, SAMN09200908, SAMN09200909, SAMN09200910, SAMN09200911, SAMN09200912, SAMN09200914, SAMN09200915, SAMN09200916, SAMN09200917, SAMN09200918, SAMN09200919, SAMN09200920, SAMN09200921, SAMN09200922, SAMN09200923, SAMN09200924, SAMN09200925, SAMN09200939, SAMN09200940, SAMN09200941, SAMN09200942, SAMN09200943, SAMN09200944, SAMN09200945, SAMN09200946, SAMN09200947, SAMN09200948, SAMN09200949, SAMN09200962, SAMN09201091, SAMN09201092, SAMN09201093, SAMN09201094, SAMN09201095, SAMN09201096, SAMN09201097, SAMN09201098, SAMN09201099, SAMN09201100, SAMN09201101, SAMN09201102, SAMN09201103, SAMN09201406, SAMN09201407, SAMN09201408, SAMN09201409, SAMN09201412, SAMN09202328, SAMN09202352, SAMN09202353, SAMN09202354, SAMN09202355, SAMN09202356, SAMN09202357, SAMN09202358, SAMN09202359, SAMN09202360, SAMN09202361, SAMN09202384, SAMN09202385, SAMN09202386, SAMN09202387, SAMN09202388, SAMN09202389, SAMN09202390, SAMN09202391, SAMN09202392, SAMN09202393, SAMN09202415, SAMN09202416, SAMN09202417, SAMN09202418, SAMN09202419, SAMN09202420, SAMN09202421, SAMN09202422, SAMN09202423
All retrieved samples
Metadata retrieved 8 days ago


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