missing

BioSample Accession(s)

SAMN04634020, SRS2251668

collection_date

2015

subgroup

missing

pathotype

missing

collected_by

missing

host_tissue_sampled

missing

host_subject_id

missing

isolate

missing

host_sex

missing

subtype

missing

passage_history

missing

host

Pachydiplax longipennis

host_disease_outcome

missing

host_disease_stage

missing

lat_lon

missing

serotype

missing

strain

7F3_DIV0205

host_disease

missing

host_description

missing

INSDC secondary accession

SRS2251668

organism

Enterococcus sp. 7F3_DIV0205

host_health_state

missing

culture_collection

missing

genotype

missing

specimen_voucher

missing

host_age

missing

NCBI submission package

Pathogen.cl.1.0

serovar

missing

geo_loc_name

USA: Illinois, Naperville

isolation_source

feces

BioSampleModel

Pathogen.cl

ENA-FIRST-PUBLIC

2016-04-14

ENA-LAST-UPDATE

2017-06-05

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX22384548" alias="DIV0205d" center_name="SUB13956108" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX22384548</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB13956108">DIV0205d</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>long-read sequence of novel enterococcal species</TITLE>
  <STUDY_REF accession="SRP108140">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP108140</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA313452</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Pacbio sequencing</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS2251668">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS2251668</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN04634020</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>DIV0205d</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <PACBIO_SMRT>
      <INSTRUMENT_MODEL>Sequel</INSTRUMENT_MODEL>
    </PACBIO_SMRT>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS2251668</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1746198</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX22384548&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX22384548&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX2883260" alias="BI_2091" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX2883260</PRIMARY_ID>
    <EXTERNAL_ID namespace="BI">BI_2091</EXTERNAL_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2500 paired end sequencing</TITLE>
  <STUDY_REF accession="SRP108140">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP108140</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA313452</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS2251668">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS2251668</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN04634020</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>SM-A4IF2</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Illumina Nextera Library Construction</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS2251668</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA570171</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2883260&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2883260&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX2885569" alias="BI_2024" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX2885569</PRIMARY_ID>
    <EXTERNAL_ID namespace="BI">BI_2024</EXTERNAL_ID>
  </IDENTIFIERS>
  <TITLE>Illumina HiSeq 2500 sequencing</TITLE>
  <STUDY_REF accession="SRP108140">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP108140</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA313452</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS2251668">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS2251668</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN04634020</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>SM-CYZV9</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Illumina Mate-Pair Frags and Jumps Libraries</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS2251668</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA570783</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2885569&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2885569&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>