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cognitis nomina
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Genomes
sc|0000147
JSON
Genome sc|0000147
Name
Palauibacter poriticola
Database
NCBI Assembly
Accession
GCA_012270965.1
Genomics
Accession
NCBI Assembly:
GCA_012270965.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
90.11%
Contamination:
3.3%
Quality:
73.61
Ribosomal and transfer RNA genes
0 16S rRNAs
1 23S rRNA (up to 73.0%)
tRNAs for 20 amino acids
Source
BioSample: SRS4865861
BioSample: SRS4865860
And 10 more…
See all sources
Other features
G+C Content:
68.94%
Coding Density:
90.15%
Codon Table:
11
N50:
80,204 bp
Contigs:
99
Largest Contig:
240,648 bp
Assembly Length:
3,562,629 bp
Ambiguous Assembly Fraction:
0.02%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2013-10-25
Location
Lat Lon:
18.5446 S 146.4881 E
Toponym
Geo Loc Name:
Australia: Orpheus Island
Environment
Env Broad Scale:
coral reef
Env Local Scale:
Tropical coral biome
Env Medium:
Tissue
Other
Host:
Porites lutea
Package
Ncbi Submission Package:
MIMS.me.host-associated.5.0
Biosamplemodel:
MIGS/MIMS/MIMARKS.host-associated
All retrieved samples
SRS4865861
: Porites lutea, replicate 1, soil extraction
SRS4865860
: Porites lutea, replicate 2, soil extraction
SRS4865857
: Porites lutea, replicate 3, soil extraction
SRS4865858
: Porites lutea, replicate 1, phenol extraction
SRS4865852
: Porites lutea, replicate 3, phenol extraction, shallow sequencing
SRS4865856
: Porites lutea, replicate 3, phenol extraction, deep sequencing 1
SRS4865853
: Porites lutea, replicate 3, phenol extraction, deep sequencing 2
SRS4865851
: Porites lutea, replicate 1, plant extraction
SRS4865855
: Porites lutea, replicate 3, plant extraction
SRS4865854
: Porites lutea, replicate 1, ultraclean extraction
SRS4865865
: Porites lutea, replicate 3, ultraclean extraction
SRS4865864
: Porites lutea sequenced prior to microbial enrichment
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
Genome sources
×
BioSample: SRS4865861
BioSample: SRS4865860
BioSample: SRS4865857
BioSample: SRS4865858
BioSample: SRS4865852
BioSample: SRS4865856
BioSample: SRS4865853
BioSample: SRS4865851
BioSample: SRS4865855
BioSample: SRS4865854
BioSample: SRS4865865
BioSample: SRS4865864
SRS4865861
×
Keywords: GSC:MIxS;MIMS:5.0
INSDC secondary accession
SRS4865861
NCBI submission package
MIMS.me.host-associated.5.0
lat lon
18.5446 S 146.4881 E
source_material_id
13206_Plut_rep1_soil
organism
coral reef metagenome
collection date
2013-10-25
env_broad_scale
coral reef
geo loc name
Australia: Orpheus Island
host
Porites lutea
env_medium
Tissue
env_local_scale
Tropical coral biome
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2019-06-03
ENA-LAST-UPDATE
2019-06-03
SRS4865860
×
Keywords: GSC:MIxS;MIMS:5.0
INSDC secondary accession
SRS4865860
NCBI submission package
MIMS.me.host-associated.5.0
lat lon
18.5446 S 146.4881 E
source_material_id
13207_Plut_rep2_soil
organism
coral reef metagenome
collection date
2013-10-25
env_broad_scale
coral reef
geo loc name
Australia: Orpheus Island
host
Porites lutea
env_medium
Tissue
env_local_scale
Tropical coral biome
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2019-06-03
ENA-LAST-UPDATE
2019-06-03
SRS4865857
×
Keywords: GSC:MIxS;MIMS:5.0
INSDC secondary accession
SRS4865857
NCBI submission package
MIMS.me.host-associated.5.0
lat lon
18.5446 S 146.4881 E
source_material_id
13208_Plut_rep3_soil
organism
coral reef metagenome
collection date
2013-10-25
env_broad_scale
coral reef
geo loc name
Australia: Orpheus Island
host
Porites lutea
env_medium
Tissue
env_local_scale
Tropical coral biome
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2019-06-03
ENA-LAST-UPDATE
2019-06-03
SRS4865858
×
Keywords: GSC:MIxS;MIMS:5.0
INSDC secondary accession
SRS4865858
NCBI submission package
MIMS.me.host-associated.5.0
lat lon
18.5446 S 146.4881 E
source_material_id
13209_Plut_rep1_phenol
organism
coral reef metagenome
collection date
2013-10-25
env_broad_scale
coral reef
geo loc name
Australia: Orpheus Island
host
Porites lutea
env_medium
Tissue
env_local_scale
Tropical coral biome
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2019-06-03
ENA-LAST-UPDATE
2019-06-03
SRS4865852
×
Keywords: GSC:MIxS;MIMS:5.0
INSDC secondary accession
SRS4865852
NCBI submission package
MIMS.me.host-associated.5.0
lat lon
18.5446 S 146.4881 E
source_material_id
13211_H8P31ADXX_Plut_rep3_phenol
organism
coral reef metagenome
collection date
2013-10-25
env_broad_scale
coral reef
geo loc name
Australia: Orpheus Island
host
Porites lutea
env_medium
Tissue
env_local_scale
Tropical coral biome
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2019-06-03
ENA-LAST-UPDATE
2019-06-03
SRS4865856
×
Keywords: GSC:MIxS;MIMS:5.0
INSDC secondary accession
SRS4865856
NCBI submission package
MIMS.me.host-associated.5.0
lat lon
18.5446 S 146.4881 E
source_material_id
13211_H9FH8ADXX_Plut_rep3_phenol
organism
coral reef metagenome
collection date
2013-10-25
env_broad_scale
coral reef
geo loc name
Australia: Orpheus Island
host
Porites lutea
env_medium
Tissue
env_local_scale
Tropical coral biome
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2019-06-03
ENA-LAST-UPDATE
2019-06-03
SRS4865853
×
Keywords: GSC:MIxS;MIMS:5.0
INSDC secondary accession
SRS4865853
NCBI submission package
MIMS.me.host-associated.5.0
lat lon
18.5446 S 146.4881 E
source_material_id
13211_HFLCTBCXX_Plut_rep3_phenol
organism
coral reef metagenome
collection date
2013-10-25
env_broad_scale
coral reef
geo loc name
Australia: Orpheus Island
host
Porites lutea
env_medium
Tissue
env_local_scale
Tropical coral biome
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2019-06-03
ENA-LAST-UPDATE
2019-06-03
SRS4865851
×
Keywords: GSC:MIxS;MIMS:5.0
INSDC secondary accession
SRS4865851
NCBI submission package
MIMS.me.host-associated.5.0
lat lon
18.5446 S 146.4881 E
source_material_id
13212_Plut_rep1_plant
organism
coral reef metagenome
collection date
2013-10-25
env_broad_scale
coral reef
geo loc name
Australia: Orpheus Island
host
Porites lutea
env_medium
Tissue
env_local_scale
Tropical coral biome
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2019-06-03
ENA-LAST-UPDATE
2019-06-03
SRS4865855
×
Keywords: GSC:MIxS;MIMS:5.0
INSDC secondary accession
SRS4865855
NCBI submission package
MIMS.me.host-associated.5.0
lat lon
18.5446 S 146.4881 E
source_material_id
13214_Plut_rep3_plant
organism
coral reef metagenome
collection date
2013-10-25
env_broad_scale
coral reef
geo loc name
Australia: Orpheus Island
host
Porites lutea
env_medium
Tissue
env_local_scale
Tropical coral biome
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2019-06-03
ENA-LAST-UPDATE
2019-06-03
SRS4865854
×
Keywords: GSC:MIxS;MIMS:5.0
INSDC secondary accession
SRS4865854
NCBI submission package
MIMS.me.host-associated.5.0
lat lon
18.5446 S 146.4881 E
source_material_id
13215_Plut_rep1_ultra
organism
coral reef metagenome
collection date
2013-10-25
env_broad_scale
coral reef
geo loc name
Australia: Orpheus Island
host
Porites lutea
env_medium
Tissue
env_local_scale
Tropical coral biome
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2019-06-03
ENA-LAST-UPDATE
2019-06-03
SRS4865865
×
Keywords: GSC:MIxS;MIMS:5.0
INSDC secondary accession
SRS4865865
NCBI submission package
MIMS.me.host-associated.5.0
lat lon
18.5446 S 146.4881 E
source_material_id
13217_Plut_rep3_ultra
organism
coral reef metagenome
collection date
2013-10-25
env_broad_scale
coral reef
geo loc name
Australia: Orpheus Island
host
Porites lutea
env_medium
Tissue
env_local_scale
Tropical coral biome
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2019-06-03
ENA-LAST-UPDATE
2019-06-03
SRS4865864
×
Keywords: GSC:MIxS;MIMS:5.0
INSDC secondary accession
SRS4865864
NCBI submission package
MIMS.me.host-associated.5.0
lat lon
18.5446 S 146.4881 E
source_material_id
22111_Plut_preenrich
organism
coral reef metagenome
collection date
2013-10-25
env_broad_scale
coral reef
geo loc name
Australia: Orpheus Island
host
Porites lutea
env_medium
Tissue
env_local_scale
Tropical coral biome
BioSampleModel
MIGS/MIMS/MIMARKS.host-associated
ENA-FIRST-PUBLIC
2019-06-03
ENA-LAST-UPDATE
2019-06-03
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