Palauibacter polyketidifaciens

Citation

Formal styling

Palauibacter polyketidifaciens Aldeguer-Riquelme et al., 2023

Effective publication

Aldeguer-Riquelme et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:0hkazsoc (validated)

Canonical URL

https://seqco.de/i:23807

Nomenclature

Rank

Species

Syllabication

po.ly.ke.ti.di.fa.ci'ens

Etymology

Gr. neut. n. polyketidum, polyketide; L. pres. part. faciens, making; N.L. masc. part. adj. polyketidifaciens, polyketide synthesizer

Nomenclatural type

NCBI Assembly: GCA_947581785.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Classification

Bacteria » Gemmatimonadota » Gemmatimonadetes » Palauibacterales » Palauibacteraceae » Palauibacter » Palauibacter polyketidifaciens

Parent

Palauibacter gtdb

Genomics

Accession

NCBI Assembly:GCA_947581785.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.41%
• Contamination: 3.3%
• Quality: 76.91

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Source

• SRA: SRR10996928

Other features

• G+C Content: 68.94%
• Coding Density: 93.52%
• Codon Table: 11
• N50: 85,903 bp
• Contigs: 52
• Largest Contig: 340,132 bp
• Assembly Length: 3,197,555 bp
• Ambiguous Assembly Fraction: 0.00069%

Submitter comments

Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA  

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_947581785.1
• GTDB Tree: s__Palauibacter polyketidifaciens
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Palauibacter polyketidifaciens (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 11 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Aldeguer-Riquelme, Borja about 2 years ago

Submitted by

Aldeguer-Riquelme, Borja almost 2 years ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria over 1 year ago

Validated by

Chuvochina, Maria over 1 year ago

Date of priority

2023-06-23 07:38 AM (UTC)