Marine sponge-associated bacterial symbiont MAG from Cymbastela concentrica

BioSample Accession(s)

SAMN39583795, ERS17848881

collection_date

2009-09-15

organism

Candidatus Tethybacter castellensis

host_taxid

484451

env_broad_scale

marine biome [ENVO:00000447]|marine benthic biome[ENVO:01000024]|marine subtidal rocky reef biome[ENVO:01000050]

metagenomic

1

derived-from

This BioSample is a metagenomic assembly obtained from the sponge metagenome BioSample: SAMN13301258

environmental-sample

1

env_local_scale

coastal sea water[ENVO:00002150]

metagenome-source

sponge metagenome

isolate

Cym b2r

NCBI submission package

MIMAG.symbiont-associated.6.0

host

Cymbastela concentrica

geo_loc_name

Australia: NSW, Sydney, Bare Island

host_life_stage

adult

host_dependence

facultative

env_medium

coastal sea water[ENVO:00002150]

lat_lon

33.991019 S 151.232503 E

sym_life_cycle_type

simple

isolation_source

bacterial pellet from marine sponge

sample-type

metagenomic assembly

BioSampleModel

MIMAG.symbiont-associated

ENA-FIRST-PUBLIC

2024-01-24

ENA-LAST-UPDATE

2024-02-05

Illumina shot-gun sequencing of bacterial pellet from marine sponge Cymbastela concentrica

BioSample Accession(s)

SAMN13301258, SRS5705655

collection_date

2009-09-15

INSDC secondary accession

SRS5705655

NCBI submission package

Metagenome.environmental.1.0

organism

sponge metagenome

host

Cymbastela concentrica

geo_loc_name

Australia: NSW, Sydney, Bare Island

samp_mat_process

Cell separation and DNA extraction

samp_size

0.2 grams

lat_lon

33.991019 S 151.232503 E

samp_collect_device

SCUBA

isolation_source

bacterial pellet from marine sponge

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-11-18

ENA-LAST-UPDATE

2023-08-29

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7200107" alias="Cym_BBAY41" center_name="SUB6586493" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7200107</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6586493">Cym_BBAY41</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina shot-gun sequencing of bacterial pellet from marine sponge Cymbastela concentrica</TITLE>
  <STUDY_REF accession="SRP230229">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP230229</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA589708</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>HMW DNA extracted from microbial pellet  via MoBio Powersoil kit, cleaned and Illumina shot-gun sequenced.</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5705655">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5705655</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN13301258</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Cym_BBAY41</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina Genome Analyzer II</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5705655</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1000358</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7200107&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7200107&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>