Genome sc|0001520

Genomics

Accession

NCBI Assembly:GCA_036679665.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.69%
• Contamination: 0.0%
• Quality: 95.69

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

5.5 ×

Source

• BioSample: SAMN39583795
• BioSample: SAMN13301258

Other features

• G+C Content: 50.32%
• Coding Density: 92.69%
• Codon Table: 11
• N50: 44,178 bp
• Contigs: 71
• Largest Contig: 160,261 bp
• Assembly Length: 1,689,527 bp
• Ambiguous Assembly Fraction: 0.054%

Submitter comments

CheckM was employed to estimate metagenome-assembled-genome completeness and contamination using the taxon-specific workflow. IMG statistics report the number of rRNA and tRNA genes present in the assembly.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2009-09-15

Location

Lat Lon: 33.991019 S 151.232503 E

Toponym

Geo Loc Name: Australia: NSW, Sydney, Bare Island

Environment

Sample Type: metagenomic assembly

Isolation Source: bacterial pellet from marine sponge

Env Broad Scale: marine biome [ENVO:00000447]|marine benthic biome[ENVO:01000024]|marine subtidal rocky reef biome[ENVO:01000050]

Env Local Scale: coastal sea water[ENVO:00002150]

Env Medium: coastal sea water[ENVO:00002150]

Other

Host: Cymbastela concentrica

Package

Ncbi Submission Package: MIMAG.symbiont-associated.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG.symbiont-associated • Metagenome or environmental

All retrieved samples

• SAMN39583795: MIMAG Metagenome-assembled Genome sample of Candidatus Tethybacter castellensis
• SAMN13301258: Bacterial pellet from marine sponge Cymbastela concentrica

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Metadata retrieved 9 months ago