JSON

Genome sc|0001540

Name

“Sysuimicrobium calidum”

Database

NCBI Assembly

Accession

GCA_031459935.1

Genomics

Accession
NCBI Assembly:GCA_031459935.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.67%
  • Contamination: 1.85%
  • Quality: 82.42
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 68.74%
  • Coding Density: 94.88%
  • Codon Table: 11
  • N50: 44,353 bp
  • Contigs: 73
  • Largest Contig: 177,143 bp
  • Assembly Length: 2,141,302 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2018-03
Location
Lat Lon: 24.92 N 98.34 E
Toponym
Geo Loc Name: China: Tengchong county, Yunnan, HHBFW-2
Environment
Sample Type: metagenomic assembly
Isolation Source: Hot spring sediment
Env Broad Scale: Hot spring
Env Local Scale: Hot spring sediment
Env Medium: Hot spring sediment
Other
Depth: Surface
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment
All retrieved samples
Metadata retrieved 4 months ago


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